SMTL ID : 3os0.1

PFV strand transfer complex (STC) at 2.81 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

homo-tetramer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.65, H.69, C.99, C.102 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.65, A:H.69, A:C.99, A:C.102 ZN.4: 4 residues within 4Å: Chain G: H.65, H.69, C.99, C.102 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.65, G:H.69, G:C.99, G:C.102

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.131, D.188 Chain E: G.13 Chain F: C.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.131, A:D.188, H2O.1, H2O.1, H2O.1 MG.3: 3 residues within 4Å: Chain B: D.131, Y.132, D.188 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.131, B:D.131, B:D.188 MG.5: 4 residues within 4Å: Chain G: D.131, D.188 Chain K: G.13 Chain L: C.1 5 PLIP interactions: 2 interactions with chain G, 3 Ligand-Water interactions Metal complexes: G:D.131, G:D.188, H2O.1, H2O.1, H2O.1 MG.6: 3 residues within 4Å: Chain H: D.131, Y.132, D.188 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:D.131, H:D.131, H:D.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maertens, G.N. et al., The mechanism of retroviral integration from X-ray structures of its key intermediates. Nature (2010)

Release Date

2010-11-17

Peptides

Integrase: ABGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

G
A

H
B

Integrase

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