SMTL ID : 3os4.2 (1 other biounit)

The Crystal Structure of Nicotinate Phosphoribosyltransferase from Yersinia pestis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 7 residues within 4Å: Chain A: M.172, V.216, G.217, T.218, I.255, R.282, V.312 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.218, A:R.282 Water bridges: A:G.217, A:G.217, A:Q.219

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: V.49, Y.50, R.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.136, A:R.136 GOL.3: 3 residues within 4Å: Chain A: Q.243, F.274, R.277 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.243, A:R.277 Water bridges: A:R.239, A:R.239, A:Q.243, A:R.277 GOL.6: 10 residues within 4Å: Chain A: K.19, A.37, V.118, I.119, W.121, E.122, E.222, I.357, K.358, L.359 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.118, A:W.121, A:E.122 Water bridges: A:L.359

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: C.41, E.45, L.47, K.106, L.107 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: Y.30, R.31, H.32, I.33 Ligand excluded by PLIP

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 1 residues within 4Å: Chain A: E.361 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.8: 1 residues within 4Å: Chain A: S.75 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.75, H2O.4, H2O.10, H2O.11, H2O.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maltseva, N. et al., The Crystal Structure of Nicotinate Phosphoribosyltransferase from Yersinia pestis. TO BE PUBLISHED

Release Date

2010-09-22

Peptides

Nicotinate phosphoribosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Nicotinate phosphoribosyltransferase

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