SMTL ID : 3oty.1

MDR769 HIV-1 protease complexed with RT/RH hepta-peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

1 x GLU- THR- PHE- TYR- VAL- ASP- GLY: RT/RH substrate peptide(Non-covalent)

GLU-THR-PHE-TYR-VAL-ASP-GLY.1: 21 residues within 4Å: Chain A: R.8, L.23, N.25, G.27, A.28, D.29, D.30, T.82 Chain B: R.8, N.25, G.27, A.28, D.29, D.30, K.45, L.46, I.47, G.48, P.81, T.82, V.84 27 PLIP interactions: 13 interactions with chain A, 14 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:T.82, B:T.82, B:V.84 Hydrogen bonds: A:R.8, A:N.25, A:D.29, A:D.29, A:D.29, A:D.30, A:D.30, B:N.25, B:N.25, B:G.27, B:D.29, B:G.48 Water bridges: A:D.29, A:T.82, B:D.30, B:D.30, B:D.30, B:D.30, B:D.30 Salt bridges: A:R.8, B:R.8, B:K.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Z. et al., Nine Crystal Structures Determine the Substrate Envelope of the MDR HIV-1 Protease. Protein J. (2011)

Release Date

2011-03-30

Peptides

MDR HIV-1 protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MDR HIV-1 protease

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