SMTL ID : 3own.5 (4 other biounits)

Potent macrocyclic renin inhibitors

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

9 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 10 residues within 4Å: Chain A: T.18, Q.19, Y.20, V.36, Y.162, T.227, G.228, A.229, S.230 Ligands: 3OX.6 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.162 Hydrogen bonds: A:Y.20, A:Y.20 ACT.2: 9 residues within 4Å: Chain A: L.117, F.253 Chain E: M.120, L.121 Ligands: NA.3, NA.4, ACT.5, NA.10, NA.17 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain E Hydrophobic interactions: A:L.117, A:F.253, E:M.120, E:L.121 ACT.5: 6 residues within 4Å: Chain A: L.117, P.118, L.121 Chain E: Y.60 Ligands: ACT.2, NA.4 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:Y.60 ACT.8: 10 residues within 4Å: Chain C: T.18, Q.19, Y.20, V.36, Y.162, T.227, G.228, A.229, S.230 Ligands: 3OX.13 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:Y.162 Hydrogen bonds: C:Y.20, C:Y.20 ACT.9: 9 residues within 4Å: Chain A: M.120, L.121 Chain C: L.117, F.253 Ligands: NA.3, NA.10, NA.11, ACT.12, NA.17 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:M.120, A:L.121, C:L.117, C:F.253 ACT.12: 6 residues within 4Å: Chain A: Y.60 Chain C: L.117, P.118, L.121 Ligands: ACT.9, NA.11 No protein-ligand interaction detected (PLIP) ACT.15: 10 residues within 4Å: Chain E: T.18, Q.19, Y.20, V.36, Y.162, T.227, G.228, A.229, S.230 Ligands: 3OX.20 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:Y.162 Hydrogen bonds: E:Y.20, E:Y.20 ACT.16: 9 residues within 4Å: Chain C: M.120, L.121 Chain E: L.117, F.253 Ligands: NA.3, NA.10, NA.17, NA.18, ACT.19 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain C Hydrophobic interactions: E:L.117, E:F.253, C:M.120, C:L.121 ACT.19: 6 residues within 4Å: Chain C: Y.60 Chain E: L.117, P.118, L.121 Ligands: ACT.16, NA.18 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Y.60

6 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Ligands: ACT.2, ACT.9, NA.10, ACT.16, NA.17 No protein-ligand interaction detected (PLIP) NA.4: 2 residues within 4Å: Ligands: ACT.2, ACT.5 No protein-ligand interaction detected (PLIP) NA.10: 5 residues within 4Å: Ligands: ACT.2, NA.3, ACT.9, ACT.16, NA.17 No protein-ligand interaction detected (PLIP) NA.11: 2 residues within 4Å: Ligands: ACT.9, ACT.12 No protein-ligand interaction detected (PLIP) NA.17: 5 residues within 4Å: Ligands: ACT.2, NA.3, ACT.9, NA.10, ACT.16 No protein-ligand interaction detected (PLIP) NA.18: 2 residues within 4Å: Ligands: ACT.16, ACT.19 No protein-ligand interaction detected (PLIP)

3 x 3OX: (2S,4S)-4-HYDROXY-2-(1-METHYLETHYL)-4-[(4R,13S)-18-[METHYL(METHYLSULFONYL)AMINO]-2,15-DIOXO-4-PHENYL-11-OXA-3,14-DIAZATRICYCLO[14.3.1.1~5,9~]HENICOSA-1(20),5(21),6,8,16,18-HEXAEN-13-YL]-N-(2-METHYLPROPYL)BUTANAMIDE(Non-covalent)

3OX.6: 24 residues within 4Å: Chain A: Q.19, D.38, G.40, S.41, R.82, Y.83, S.84, T.85, P.118, F.119, L.121, F.124, Q.135, I.137, D.226, G.228, A.229, S.230, Y.231, I.232, S.233, H.301, M.303 Ligands: ACT.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Q.19, A:T.85, A:P.118, A:F.119, A:L.121, A:Q.135, A:I.137 Hydrogen bonds: A:D.38, A:G.40, A:G.40, A:S.84, A:T.85, A:G.228, A:S.230 pi-Stacking: A:F.124 3OX.13: 24 residues within 4Å: Chain C: Q.19, D.38, G.40, S.41, R.82, Y.83, S.84, T.85, P.118, F.119, L.121, F.124, Q.135, I.137, D.226, G.228, A.229, S.230, Y.231, I.232, S.233, H.301, M.303 Ligands: ACT.8 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:Q.19, C:T.85, C:P.118, C:F.119, C:L.121, C:Q.135, C:I.137 Hydrogen bonds: C:D.38, C:G.40, C:G.40, C:S.84, C:T.85, C:G.228, C:S.230, C:H.301 pi-Stacking: C:F.124 3OX.20: 24 residues within 4Å: Chain E: Q.19, D.38, G.40, S.41, R.82, Y.83, S.84, T.85, P.118, F.119, L.121, F.124, Q.135, I.137, D.226, G.228, A.229, S.230, Y.231, I.232, S.233, H.301, M.303 Ligands: ACT.15 16 PLIP interactions: 16 interactions with chain E Hydrophobic interactions: E:Q.19, E:T.85, E:P.118, E:F.119, E:L.121, E:Q.135, E:I.137 Hydrogen bonds: E:D.38, E:G.40, E:G.40, E:S.84, E:T.85, E:G.228, E:S.230, E:H.301 pi-Stacking: E:F.124

3 x 3OW: (2S,4S)-4-HYDROXY-2-(1-METHYLETHYL)-4-[(4S,13S)-18-[METHYL(METHYLSULFONYL)AMINO]-2,15-DIOXO-4-PHENYL-11-OXA-3,14-DIAZATRICYCLO[14.3.1.1~5,9~]HENICOSA-1(20),5(21),6,8,16,18-HEXAEN-13-YL]-N-(2-METHYLPROPYL)BUTANAMIDE(Non-covalent)

3OW.7: 25 residues within 4Å: Chain B: T.18, Q.19, Y.20, V.36, D.38, G.40, S.41, R.82, Y.83, S.84, T.85, F.124, Q.135, I.137, Y.162, D.226, T.227, G.228, A.229, S.230, Y.231, S.233, H.301, M.303, I.305 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:V.36, B:V.36, B:T.85, B:F.124, B:Q.135, B:I.137, B:I.305 Hydrogen bonds: B:D.38, B:G.40, B:G.40, B:S.84, B:T.85, B:T.85, B:G.228, B:G.228, B:S.230, B:S.233 pi-Stacking: B:F.124 3OW.14: 25 residues within 4Å: Chain D: T.18, Q.19, Y.20, V.36, D.38, G.40, S.41, R.82, Y.83, S.84, T.85, F.124, Q.135, I.137, Y.162, D.226, T.227, G.228, A.229, S.230, Y.231, S.233, H.301, M.303, I.305 17 PLIP interactions: 17 interactions with chain D Hydrophobic interactions: D:V.36, D:V.36, D:T.85, D:F.124, D:Q.135, D:I.137, D:I.305 Hydrogen bonds: D:D.38, D:G.40, D:G.40, D:S.84, D:T.85, D:G.228, D:G.228, D:S.230, D:S.233 pi-Stacking: D:F.124 3OW.21: 25 residues within 4Å: Chain F: T.18, Q.19, Y.20, V.36, D.38, G.40, S.41, R.82, Y.83, S.84, T.85, F.124, Q.135, I.137, Y.162, D.226, T.227, G.228, A.229, S.230, Y.231, S.233, H.301, M.303, I.305 18 PLIP interactions: 18 interactions with chain F Hydrophobic interactions: F:V.36, F:V.36, F:T.85, F:F.124, F:Q.135, F:I.137, F:I.305 Hydrogen bonds: F:D.38, F:G.40, F:G.40, F:S.84, F:T.85, F:T.85, F:G.228, F:G.228, F:S.230, F:S.233 pi-Stacking: F:F.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sund, C. et al., Design and synthesis of potent macrocyclic renin inhibitors. Bioorg.Med.Chem.Lett. (2011)

Release Date

2010-12-15

Peptides

Renin: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Renin

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