SMTL ID : 3oxl.1

Human lysine methyltransferase Smyd3 in complex with AdoHcy (Form II)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.208, C.261, C.263, C.266 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.208, A:C.261, A:C.263, A:C.266 ZN.2: 4 residues within 4Å: Chain A: C.49, C.52, C.71, C.75 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.49, A:C.52, A:C.75 ZN.3: 5 residues within 4Å: Chain A: C.62, Q.64, C.65, H.83, C.87 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.62, A:H.83, A:C.87

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.4: 17 residues within 4Å: Chain A: R.14, G.15, N.16, Y.124, E.130, N.132, C.180, N.181, S.202, L.203, L.204, N.205, H.206, Y.239, Y.257, F.259, E.260 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.14, A:N.16, A:N.132, A:N.132, A:N.205, A:H.206, A:H.206 pi-Stacking: A:F.259, A:F.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, S. et al., Structural and biochemical studies of human lysine methyltransferase Smyd3 reveal the important functional roles of its post-SET and TPR domains and the regulation of its activity by DNA binding. Nucleic Acids Res. (2011)

Release Date

2011-02-23

Peptides

SET and MYND domain-containing protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SET and MYND domain-containing protein 3

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