SMTL ID : 3p09.3 (2 other biounits)

Crystal Structure of Beta-Lactamase from Francisella tularensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

14 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: D.195, K.196 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.196 Water bridges: A:D.195, A:D.195, A:K.199 SO4.2: 4 residues within 4Å: Chain A: Y.42, N.51, K.53, K.179 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.42 Salt bridges: A:K.53, A:K.179 SO4.3: 3 residues within 4Å: Chain A: G.139, L.140, Q.141 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.140, A:Q.141, A:Q.141 Water bridges: A:N.142 SO4.4: 6 residues within 4Å: Chain A: S.64, S.125, K.229, T.230, G.231, T.232 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:S.64, A:S.125, A:T.230, A:T.232, A:T.232 Water bridges: A:S.64, A:S.64, A:K.67, A:T.232 Salt bridges: A:K.229, D:K.98 SO4.5: 4 residues within 4Å: Chain A: K.29, K.38 Chain B: G.151, N.153 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.153 Water bridges: B:N.153, B:N.153 Salt bridges: A:K.29, A:K.38 SO4.6: 4 residues within 4Å: Chain B: Y.42, N.51, K.53, K.179 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.51 Water bridges: B:K.183 Salt bridges: B:K.53, B:K.179 SO4.7: 7 residues within 4Å: Chain B: S.64, S.125, K.229, T.230, G.231, T.232 Chain C: K.98 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:S.64, B:S.64, B:S.125, B:T.230, B:T.232, B:T.232 Water bridges: B:S.64 Salt bridges: B:K.229, C:K.98 SO4.9: 2 residues within 4Å: Chain C: D.195, K.196 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.196 Water bridges: C:D.195, C:D.195, C:K.199 SO4.10: 4 residues within 4Å: Chain C: Y.42, N.51, K.53, K.179 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.42 Salt bridges: C:K.53, C:K.179 SO4.11: 3 residues within 4Å: Chain C: G.139, L.140, Q.141 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:L.140, C:Q.141, C:Q.141 Water bridges: C:N.142 SO4.12: 6 residues within 4Å: Chain C: S.64, S.125, K.229, T.230, G.231, T.232 11 PLIP interactions: 10 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:S.64, C:S.125, C:T.230, C:T.232, C:T.232 Water bridges: C:S.64, C:S.64, C:K.67, C:T.232 Salt bridges: C:K.229, B:K.98 SO4.13: 4 residues within 4Å: Chain C: K.29, K.38 Chain D: G.151, N.153 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain D Salt bridges: C:K.29, C:K.38 Hydrogen bonds: D:N.153 Water bridges: D:N.153, D:N.153 SO4.14: 4 residues within 4Å: Chain D: Y.42, N.51, K.53, K.179 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.51 Water bridges: D:K.183 Salt bridges: D:K.53, D:K.179 SO4.15: 7 residues within 4Å: Chain A: K.98 Chain D: S.64, S.125, K.229, T.230, G.231, T.232 9 PLIP interactions: 8 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:S.64, D:S.64, D:S.125, D:T.230, D:T.232, D:T.232 Water bridges: D:S.64 Salt bridges: D:K.229, A:K.98

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 5 residues within 4Å: Chain B: V.134, G.138, G.139, L.140, Q.141 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.140, B:Q.141 GOL.16: 5 residues within 4Å: Chain D: V.134, G.138, G.139, L.140, Q.141 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:L.140, D:Q.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Beta-Lactamase from Francisella tularensis. To be Published

Release Date

2010-10-13

Peptides

Beta-lactamase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Beta-lactamase

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