SMTL ID : 3p0k.1

Structure of Baculovirus Sulfhydryl Oxidase Ac92

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-dimer

Ligands

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 6 residues within 4Å: Chain A: Y.19, L.46, T.113, M.114, L.117, L.146 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.19 IMD.4: 6 residues within 4Å: Chain B: Y.19, L.46, T.113, M.114, L.117, L.146 No protein-ligand interaction detected (PLIP)

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 22 residues within 4Å: Chain A: R.11, F.107, T.108, I.110, W.111, M.114, H.115, F.152, M.158, C.159, H.162, Y.163, M.223, H.226, N.227, I.229, N.230, K.233, Q.236, R.237, M.248, Y.253 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:F.107, A:I.110, A:W.111, A:W.111, A:F.152, A:F.152, A:Y.163 Hydrogen bonds: A:R.11, A:R.11, A:W.111, A:M.223, A:N.230, A:Q.236, A:Q.236, A:R.237 Water bridges: A:Y.12, A:T.108, A:T.108, A:T.108, A:K.233, A:K.233 Salt bridges: A:H.226, A:K.233 pi-Stacking: A:H.226, A:H.226 FAD.5: 22 residues within 4Å: Chain B: R.11, F.107, T.108, I.110, W.111, M.114, H.115, F.152, M.158, C.159, H.162, Y.163, M.223, H.226, N.227, I.229, N.230, K.233, Q.236, R.237, M.248, Y.253 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:F.107, B:I.110, B:W.111, B:W.111, B:F.152, B:F.152, B:Y.163 Hydrogen bonds: B:R.11, B:R.11, B:T.108, B:W.111, B:H.162, B:M.223, B:H.226, B:N.230, B:Q.236, B:Q.236, B:R.237 Water bridges: B:T.108, B:T.108, B:K.233, B:K.233 Salt bridges: B:H.226, B:K.233 pi-Stacking: B:H.226, B:H.226

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 6 residues within 4Å: Chain A: Y.148, V.150, R.160, Y.163, M.164, K.167 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.150, A:Y.163 Hydrogen bonds: A:Y.148 Salt bridges: A:K.167 ACT.6: 6 residues within 4Å: Chain B: Y.148, V.150, R.160, Y.163, M.164, K.167 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.150, B:Y.163 Hydrogen bonds: B:Y.148 Salt bridges: B:K.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hakim, M. et al., Structure of a baculovirus sulfhydryl oxidase, a highly divergent member of the erv flavoenzyme family. J.Virol. (2011)

Release Date

2011-12-07

Peptides

sulfhydryl oxidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

sulfhydryl oxidase