- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x ICT: ISOCITRIC ACID(Non-covalent)
ICT.3: 16 residues within 4Å:- Chain A: Y.86, S.88, G.89, W.90, D.151, C.189, G.190, H.191, R.226, E.285, N.313, S.315, S.317, T.347, L.348
- Ligands: MG.4
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:T.347, A:L.348
- Hydrogen bonds: A:G.89, A:W.90, A:G.190, A:R.226, A:N.313, A:S.315, A:S.317, A:T.347, A:T.347
- Water bridges: A:D.105, A:K.187, A:K.187, A:K.187, A:K.187
- Salt bridges: A:H.191, A:H.191, A:R.226
ICT.6: 16 residues within 4Å:- Chain B: Y.86, S.88, G.89, W.90, D.151, C.189, G.190, H.191, R.226, E.285, N.313, S.315, S.317, T.347, L.348
- Ligands: MG.7
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:T.347, B:L.348
- Hydrogen bonds: B:Y.86, B:G.89, B:W.90, B:D.105, B:G.190, B:R.226, B:N.313, B:S.315, B:S.317, B:T.347
- Water bridges: B:K.187, B:K.187, B:K.187
- Salt bridges: B:H.191, B:H.191, B:R.226
ICT.10: 17 residues within 4Å:- Chain C: Y.86, S.88, G.89, W.90, D.105, D.151, C.189, G.190, H.191, R.226, E.285, N.313, S.315, S.317, T.347, L.348
- Ligands: MG.11
18 PLIP interactions:18 interactions with chain C- Hydrophobic interactions: C:T.347
- Hydrogen bonds: C:Y.86, C:G.89, C:W.90, C:D.105, C:G.190, C:R.226, C:N.313, C:S.315, C:S.317, C:T.347
- Water bridges: C:K.187, C:K.187, C:K.187, C:R.226
- Salt bridges: C:H.191, C:H.191, C:R.226
ICT.13: 17 residues within 4Å:- Chain D: Y.86, S.88, G.89, W.90, D.105, D.151, C.189, G.190, H.191, R.226, E.285, N.313, S.315, S.317, T.347, L.348
- Ligands: MG.14
19 PLIP interactions:19 interactions with chain D- Hydrophobic interactions: D:T.347, D:L.348
- Hydrogen bonds: D:G.89, D:W.90, D:G.190, D:R.226, D:N.313, D:S.315, D:S.317, D:T.347, D:T.347
- Water bridges: D:D.105, D:D.105, D:K.187, D:K.187, D:K.187
- Salt bridges: D:H.191, D:H.191, D:R.226
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 2 residues within 4Å:- Chain A: D.151
- Ligands: ICT.3
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.151, H2O.6, H2O.6, H2O.6
MG.7: 3 residues within 4Å:- Chain B: D.105, D.151
- Ligands: ICT.6
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.151, H2O.10, H2O.12, H2O.12
MG.11: 3 residues within 4Å:- Chain C: D.105, D.151
- Ligands: ICT.10
4 PLIP interactions:1 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:D.151, H2O.17, H2O.17, H2O.19
MG.14: 3 residues within 4Å:- Chain D: D.105, D.151
- Ligands: ICT.13
4 PLIP interactions:1 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:D.151, H2O.23, H2O.25, H2O.26
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- SSGCID et al., Crystal structure of isocitrate lyase from Brucella melitensis, bound to magnesium isocitrate. To be Published
- Release Date
- 2010-10-27
- Peptides
- Isocitrate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- homo-tetramer
- Ligands
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x ICT: ISOCITRIC ACID(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- SSGCID et al., Crystal structure of isocitrate lyase from Brucella melitensis, bound to magnesium isocitrate. To be Published
- Release Date
- 2010-10-27
- Peptides
- Isocitrate lyase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D