SMTL ID : 3p20.1

Crystal structure of vanadate bound subunit A of the A1AO ATP synthase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

2 x VO4: VANADATE ION(Non-covalent)

VO4.1: 6 residues within 4Å: Chain A: P.233, G.234, S.238, K.240, T.241, L.417 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.233, A:S.238, A:S.238 VO4.2: 5 residues within 4Å: Chain A: P.233, F.399, F.414, L.417, D.418 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.419

6 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 2 residues within 4Å: Chain A: A.330, A.391 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.330 Water bridges: A:S.332 ACY.5: 6 residues within 4Å: Chain A: T.241, V.242, T.243, F.427, P.428, A.429 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.241 Hydrogen bonds: A:V.242, A:T.243 ACY.8: 3 residues within 4Å: Chain A: N.431, W.432, L.433 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.432 Hydrogen bonds: A:N.431 ACY.9: 3 residues within 4Å: Chain A: K.461, L.528, D.532 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.461 ACY.11: 3 residues within 4Å: Chain A: G.323, D.325, V.383 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.254 ACY.12: 2 residues within 4Å: Chain A: N.539, R.540 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.539

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 2 residues within 4Å: Chain A: E.183, I.184 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.183 Hydrogen bonds: A:I.184 MPD.6: 5 residues within 4Å: Chain A: Q.246, K.249, L.278, A.507, F.508 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.278 Hydrogen bonds: A:K.249 MPD.7: 5 residues within 4Å: Chain A: A.337, L.364, P.402, V.403, N.406 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.337, A:L.364, A:P.402, A:V.403 Hydrogen bonds: A:A.337, A:P.402, A:N.406

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.10: 5 residues within 4Å: Chain A: W.250, E.510, V.511, Y.514, R.563 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.511, A:R.563

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manimekalai, M.S. et al., The transition-like state and Pi entrance into the catalytic a subunit of the biological engine A-ATP synthase. J.Mol.Biol. (2011)

Release Date

2011-03-30

Peptides

V-type ATP synthase alpha chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

V-type ATP synthase alpha chain

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