SMTL ID : 3p24.1 (3 other biounits)

Structure of profragilysin-3 from Bacteroides fragilis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 7 residues within 4Å: Chain A: Y.265, T.266, N.290, K.292, A.293, Y.296, Y.301 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.265, A:T.266, A:N.290, A:K.292

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: E.227, N.228, G.229, S.230, R.305 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.229 GOL.3: 2 residues within 4Å: Chain A: Y.221, Y.296 No protein-ligand interaction detected (PLIP) GOL.4: 5 residues within 4Å: Chain A: Y.115, D.178, T.371, G.372, Y.373 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.178, A:T.371 Water bridges: A:Y.115

2 x AZI: AZIDE ION(Non-covalent)

AZI.5: 2 residues within 4Å: Chain A: T.284, W.318 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.288, A:K.288, A:K.288, A:W.318 AZI.6: 2 residues within 4Å: Chain A: H.358, S.378 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.358, A:S.378 Water bridges: A:D.360, A:S.378, A:E.379

1 x ZN: ZINC ION(Non-covalent)

ZN.7: 4 residues within 4Å: Chain A: D.194, H.348, H.352, H.358 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.194, A:D.194, A:H.348, A:H.352, A:H.358

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goulas, T. et al., Structure, function and latency regulation of a bacterial enterotoxin potentially derived from a mammalian adamalysin/ADAM xenolog. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2010-12-29

Peptides

BFT-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BFT-3

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