SMTL ID : 3p4e.1

Phosphoribosylformylglycinamidine cyclo-ligase from Vibrio cholerae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 7 residues within 4Å: Chain A: V.27, D.111, I.127, G.143, G.144, E.145, T.146 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.144, A:E.145, A:E.145 Water bridges: A:T.146 AMP.5: 7 residues within 4Å: Chain B: V.27, D.111, I.127, G.143, G.144, E.145, T.146 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.144, B:E.145, B:E.145, B:E.145, B:T.146 Water bridges: B:T.146

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: L.216, V.281, W.285, E.288 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.288 GOL.6: 4 residues within 4Å: Chain B: L.216, V.281, W.285, E.288 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.288

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 7 residues within 4Å: Chain A: N.196, G.197, Y.198, S.199, L.200, G.253, T.300 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.196, A:G.197, A:S.199, A:L.200 Water bridges: A:T.73, A:Y.198 CIT.7: 7 residues within 4Å: Chain B: N.196, G.197, Y.198, S.199, L.200, G.253, T.300 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.196, B:G.197, B:S.199, B:L.200 Water bridges: B:T.73, B:T.73, B:Y.198

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 7 residues within 4Å: Chain A: V.101, I.174, D.175, G.176, A.247, I.248, R.262 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.101, A:I.248, A:R.262 EDO.8: 7 residues within 4Å: Chain B: V.101, I.174, D.175, G.176, A.247, I.248, R.262 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.101, B:I.248, B:R.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., Phosphoribosylformylglycinamidine cyclo-ligase from Vibrio cholerae. To be Published

Release Date

2010-10-20

Peptides

Phosphoribosylformylglycinamidine cyclo-ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Phosphoribosylformylglycinamidine cyclo-ligase