SMTL ID : 3p73.1

Crystal Structures of the Chicken YF1*7.1 molecule

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 16A: CETYL-TRIMETHYL-AMMONIUM(Non-covalent)

16A.1: 22 residues within 4Å: Chain A: Y.9, L.11, I.26, G.28, F.35, G.36, T.37, Y.38, A.45, W.60, Q.63, K.66, A.67, G.70, D.73, F.74, N.77, F.98, Y.114, W.145, Y.151, W.155 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.9, A:L.11, A:I.26, A:F.35, A:Y.38, A:A.45, A:W.60, A:Q.63, A:F.74, A:F.98, A:W.155 Salt bridges: A:D.73

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: I.108, V.164, R.168 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.168 ACT.3: 5 residues within 4Å: Chain A: W.76, R.84, T.141, R.144, W.145 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.84, A:R.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hee, C.S. et al., Structure of a Classical MHC Class I Molecule That Binds "Non-Classical" Ligands. Plos Biol. (2010)

Release Date

2010-11-24

Peptides

MHC Rfp-Y class I alpha chain: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC Rfp-Y class I alpha chain

Beta-2-microglobulin

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