SMTL ID : 3p8k.1

Crystal Structure of a putative carbon-nitrogen family hydrolase from Staphylococcus aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 4 residues within 4Å: Chain A: E.39, Q.82, S.85, F.86 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.39 Water bridges: A:E.39, A:E.39

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: K.120 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: D.97, L.155, S.156, D.157 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: R.170, W.192 Ligands: PEG.4 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain A: N.79, N.105, R.107, E.127 Ligand excluded by PLIP

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 8 residues within 4Å: Chain A: N.211, N.212, R.266, I.269, P.270, V.271, F.272, K.273 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.211, A:N.212, A:F.272, A:K.273 PEG.4: 9 residues within 4Å: Chain A: V.134, P.135, M.136, Y.167, R.196 Chain B: N.268, I.269, P.270 Ligands: CL.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.196, A:R.196 PEG.11: 8 residues within 4Å: Chain B: N.211, N.212, R.266, I.269, P.270, V.271, F.272, K.273 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.211, B:F.272

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 4 residues within 4Å: Chain A: E.74, A.76, N.78, Q.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.78, A:Q.82 PGE.6: 4 residues within 4Å: Chain A: E.47, K.93, Y.94, K.95 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.47

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 4 residues within 4Å: Chain A: H.20, K.22, E.53, D.55 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.20, A:E.53, A:E.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, W. et al., Crystal Structure of carbon-nitrogen family hydrolase from Staphylococcus aureus. To be Published

Release Date

2011-10-19

Peptides

Hydrolase, carbon-nitrogen family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hydrolase, carbon-nitrogen family