SMTL ID : 3p96.1

Crystal structure of Phosphoserine phosphatase SerB from Mycobacterium avium, native form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.191, D.193, D.347 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.191, A:D.193, A:D.347, H2O.1, H2O.1, H2O.2 MG.4: 3 residues within 4Å: Chain B: D.191, D.193, D.347 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.191, B:D.193, B:D.347, H2O.5, H2O.6, H2O.6

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: D.191, G.280, K.324, N.350 Ligands: EDO.3 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain B: D.191, G.280, K.324, N.350 Ligands: EDO.6 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: D.193, I.202, F.229, R.236, G.280, G.281 Ligands: CL.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.202, A:R.236, A:R.236 EDO.6: 7 residues within 4Å: Chain B: D.193, I.202, F.229, R.236, G.280, G.281 Ligands: CL.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.202, B:R.236, B:R.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., SAD phasing using iodide ions in a high-throughput structural genomics environment. J.Struct.Funct.Genom. (2011)

Release Date

2010-11-10

Peptides

Phosphoserine phosphatase SerB: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Phosphoserine phosphatase SerB

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