SMTL ID : 3pag.1 (1 other biounit)

Crystal structure of the V130D mutant of OXA-24/40 in complex with doripenem

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x 4J6: (4R,5S)-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-3-({(3S,5S)-5-[(sulfamoylamino)methyl]pyrrolidin-3-yl}sulfanyl)-4,5-dihydro-1H-pyrrole-2-carboxylic acid(Covalent)

4J6.1: 17 residues within 4Å: Chain A: A.50, S.51, Y.82, M.84, W.85, L.97, S.98, D.100, L.138, S.189, G.190, W.191, M.193, S.227, G.228, S.229, R.231 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.82, A:L.138 Hydrogen bonds: A:S.51, A:S.98, A:S.189, A:S.189, A:W.191, A:G.228, A:S.229, A:R.231 Salt bridges: A:K.188, A:R.231

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: G.111, L.112, E.113 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.112, A:E.113 Water bridges: A:L.114 SO4.3: 2 residues within 4Å: Chain A: K.164, L.165 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.165 SO4.4: 2 residues within 4Å: Chain A: Q.148, N.151 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schneider, K.D. et al., Structures of the Class D Carbapenemase OXA-24 from Acinetobacter baumannii in Complex with Doripenem. J.Mol.Biol. (2011)

Release Date

2011-01-19

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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