- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
BME.2: 4 residues within 4Å:- Chain B: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.138
BME.6: 4 residues within 4Å:- Chain D: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:S.138
BME.11: 4 residues within 4Å:- Chain F: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:S.138
BME.14: 4 residues within 4Å:- Chain H: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:S.138
BME.18: 4 residues within 4Å:- Chain J: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain J- Hydrogen bonds: J:S.138
BME.22: 5 residues within 4Å:- Chain L: H.61, C.129, L.130, Y.137, S.138
1 PLIP interactions:1 interactions with chain L- Hydrogen bonds: L:S.138
BME.26: 4 residues within 4Å:- Chain N: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain N- Hydrogen bonds: N:S.138
BME.30: 4 residues within 4Å:- Chain P: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain P- Hydrogen bonds: P:S.138
BME.35: 4 residues within 4Å:- Chain R: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain R- Hydrogen bonds: R:S.138
BME.38: 4 residues within 4Å:- Chain T: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain T- Hydrogen bonds: T:S.138
BME.42: 4 residues within 4Å:- Chain V: H.61, C.129, L.130, S.138
1 PLIP interactions:1 interactions with chain V- Hydrogen bonds: V:S.138
BME.46: 5 residues within 4Å:- Chain X: H.61, C.129, L.130, Y.137, S.138
1 PLIP interactions:1 interactions with chain X- Hydrogen bonds: X:S.138
- 24 x DHB: 3,4-DIHYDROXYBENZOIC ACID(Non-covalent)
DHB.3: 13 residues within 4Å:- Chain A: G.14, P.15, R.133
- Chain B: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.1
Ligand excluded by PLIPDHB.4: 4 residues within 4Å:- Chain B: L.20, R.33
- Chain F: P.22, I.28
Ligand excluded by PLIPDHB.7: 13 residues within 4Å:- Chain C: G.14, P.15, R.133
- Chain D: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.5
Ligand excluded by PLIPDHB.8: 4 residues within 4Å:- Chain B: P.22, I.28
- Chain D: L.20, R.33
Ligand excluded by PLIPDHB.9: 5 residues within 4Å:- Chain D: P.22, I.28, R.33
- Chain F: L.20, R.33
Ligand excluded by PLIPDHB.12: 14 residues within 4Å:- Chain E: T.12, G.14, P.15, R.133
- Chain F: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.10
Ligand excluded by PLIPDHB.15: 13 residues within 4Å:- Chain G: G.14, P.15, R.133
- Chain H: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.13
Ligand excluded by PLIPDHB.16: 4 residues within 4Å:- Chain H: L.20, R.33
- Chain L: P.22, I.28
Ligand excluded by PLIPDHB.19: 13 residues within 4Å:- Chain I: G.14, P.15, R.133
- Chain J: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.17
Ligand excluded by PLIPDHB.20: 3 residues within 4Å:- Chain H: P.22, I.28
- Chain J: R.33
Ligand excluded by PLIPDHB.23: 13 residues within 4Å:- Chain K: G.14, P.15, R.133
- Chain L: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.21
Ligand excluded by PLIPDHB.24: 4 residues within 4Å:- Chain J: L.20, P.22, I.28
- Chain L: R.33
Ligand excluded by PLIPDHB.27: 13 residues within 4Å:- Chain M: G.14, P.15, R.133
- Chain N: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.25
Ligand excluded by PLIPDHB.28: 4 residues within 4Å:- Chain N: L.20, R.33
- Chain R: P.22, I.28
Ligand excluded by PLIPDHB.31: 13 residues within 4Å:- Chain O: G.14, P.15, R.133
- Chain P: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.29
Ligand excluded by PLIPDHB.32: 4 residues within 4Å:- Chain N: P.22, I.28
- Chain P: L.20, R.33
Ligand excluded by PLIPDHB.33: 5 residues within 4Å:- Chain P: P.22, I.28, R.33
- Chain R: L.20, R.33
Ligand excluded by PLIPDHB.36: 14 residues within 4Å:- Chain Q: T.12, G.14, P.15, R.133
- Chain R: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.34
Ligand excluded by PLIPDHB.39: 13 residues within 4Å:- Chain S: G.14, P.15, R.133
- Chain T: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.37
Ligand excluded by PLIPDHB.40: 4 residues within 4Å:- Chain T: L.20, R.33
- Chain X: P.22, I.28
Ligand excluded by PLIPDHB.43: 13 residues within 4Å:- Chain U: G.14, P.15, R.133
- Chain V: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.41
Ligand excluded by PLIPDHB.44: 3 residues within 4Å:- Chain T: P.22, I.28
- Chain V: R.33
Ligand excluded by PLIPDHB.47: 13 residues within 4Å:- Chain W: G.14, P.15, R.133
- Chain X: Y.24, Y.108, Y.147, W.149, R.157, H.160, H.162, Q.177, I.191
- Ligands: FE.45
Ligand excluded by PLIPDHB.48: 4 residues within 4Å:- Chain V: L.20, P.22, I.28
- Chain X: R.33
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Orville, A.M. et al., Crystal structures of substrate and substrate analog complexes of protocatechuate 3,4-dioxygenase: endogenous Fe3+ ligand displacement in response to substrate binding. Biochemistry (1997)
- Release Date
- 1998-01-21
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
AO
BQ
CS
DU
EW
FB
MD
NF
OH
PJ
QL
RN
MP
NR
OT
PV
QX
R
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x FE: FE (III) ION(Non-covalent)
- 12 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)
- 24 x DHB: 3,4-DIHYDROXYBENZOIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Orville, A.M. et al., Crystal structures of substrate and substrate analog complexes of protocatechuate 3,4-dioxygenase: endogenous Fe3+ ligand displacement in response to substrate binding. Biochemistry (1997)
- Release Date
- 1998-01-21
- Peptides
- PROTOCATECHUATE 3,4-DIOXYGENASE: ACEGIKMOQSUW
PROTOCATECHUATE 3,4-DIOXYGENASE: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
BE
CG
DI
EK
FM
AO
BQ
CS
DU
EW
FB
MD
NF
OH
PJ
QL
RN
MP
NR
OT
PV
QX
R