SMTL ID : 3pe7.1

Oligogalacturonate lyase in complex with manganese

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.287, Q.350, H.353, H.355 Ligands: ACT.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.287, A:H.353, A:H.355, ACT.4

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: M.1, D.57 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:M.1, A:D.57, H2O.8, H2O.8, H2O.11 CA.3: 2 residues within 4Å: Chain A: D.270, E.272 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.270, A:D.270, A:E.272

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 5 residues within 4Å: Chain A: H.287, Q.350, H.353, H.355 Ligands: MN.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.350 Salt bridges: A:H.287, A:H.353, A:H.355 ACT.5: 4 residues within 4Å: Chain A: L.64, T.73, L.75, L.109 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.64, A:L.75, A:L.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abbott, D.W. et al., The active site of oligogalacturonate lyase provides unique insights into cytoplasmic oligogalacturonate beta-elimination. J.Biol.Chem. (2010)

Release Date

2010-11-03

Peptides

Oligogalacturonate lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Oligogalacturonate lyase