SMTL ID : 3peu.2 (1 other biounit)

S. cerevisiae Dbp5 L327V C-terminal domain bound to Gle1 H337R and IP6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.1: 7 residues within 4Å: Chain A: I.19, K.23, K.92, R.96, R.133, K.136, K.137 22 PLIP interactions: 22 interactions with chain A Water bridges: A:R.96, A:R.96, A:R.133, A:R.133, A:K.136, A:K.136, A:K.137, A:K.137, A:K.137, A:K.160 Salt bridges: A:K.23, A:K.92, A:K.92, A:K.92, A:R.96, A:R.133, A:R.133, A:K.136, A:K.136, A:K.136, A:K.137, A:K.160

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: I.148, W.159, N.170, D.174, T.225, N.226, T.227 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.174, A:N.226, A:N.226 GOL.3: 8 residues within 4Å: Chain A: F.5, I.8, G.143, T.145, R.215, T.219, P.220, L.223 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.145 GOL.5: 9 residues within 4Å: Chain A: L.221, N.222 Chain B: A.44, V.95, D.112, L.113, P.114, T.115, R.129 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:L.221, A:N.222, B:T.115, B:T.115, B:R.129, B:R.129 Water bridges: A:N.222

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: K.269 Chain B: T.45, K.46 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:K.269 Hydrogen bonds: B:K.46, B:K.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montpetit, B. et al., A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP(6) in mRNA export. Nature (2011)

Release Date

2011-03-23

Peptides

Nucleoporin GLE1: A
ATP-dependent RNA helicase DBP5: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Nucleoporin GLE1

ATP-dependent RNA helicase DBP5

Related Entries With Identical Sequence