SMTL ID : 3pg6.2 (1 other biounit)

The carboxyl terminal domain of human deltex 3-like

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 5 residues within 4Å: Chain A: G.133, G.134, P.135, P.141 Ligands: PEG.4 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.133 PEG.3: 1 residues within 4Å: Chain A: F.49 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.48 Water bridges: A:R.90 PEG.4: 8 residues within 4Å: Chain A: F.132, G.133, E.136, M.137 Chain B: S.33, S.57, K.59 Ligands: PEG.1 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.130, A:S.130, A:G.133, B:S.33, B:S.57

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 6 residues within 4Å: Chain A: Y.110, S.111, R.112, V.113, T.121, W.122 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.111, A:R.112, A:V.113, A:T.121, A:W.122 Water bridges: A:R.79, A:R.79, A:S.111 Salt bridges: A:R.112, A:R.112 CIT.5: 7 residues within 4Å: Chain A: L.114 Chain B: R.79, S.111, V.119, I.120, T.121, W.122 13 PLIP interactions: 5 interactions with chain A, 8 interactions with chain B Water bridges: A:G.76, A:Q.78, A:R.79, A:R.79, A:R.79, B:R.112 Hydrophobic interactions: B:T.121 Hydrogen bonds: B:R.79, B:S.111, B:I.120, B:W.122 Salt bridges: B:R.79, B:R.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Obiero, J. et al., Fold of the conserved DTC domain in Deltex proteins. Proteins (2012)

Release Date

2010-12-01

Peptides

E3 ubiquitin-protein ligase DTX3L: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

E3 ubiquitin-protein ligase DTX3L

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