SMTL ID : 3pgb.1

Crystal structure of Aspergillus nidulans amine oxidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA-MAN.1: 10 residues within 4Å: Chain A: N.90, T.92, W.100, D.101, A.140, T.141, T.142, R.267, D.268, P.269 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.100, A:R.267, A:D.268 NAG-NAG-BMA-MAN.9: 10 residues within 4Å: Chain B: N.90, T.92, W.100, D.101, A.140, T.141, T.142, R.267, D.268, P.269 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.100, B:R.267

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: Q.604, D.605, N.684, Q.685 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.604 NAG-NAG.10: 4 residues within 4Å: Chain B: Q.604, D.605, N.684, Q.685 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Q.604

2 x CU: COPPER (II) ION(Non-covalent)

CU.3: 3 residues within 4Å: Chain A: H.532, H.534, H.698 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.532, A:H.534, A:H.698, H2O.8 CU.11: 3 residues within 4Å: Chain B: H.532, H.534, H.698 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.532, B:H.534, B:H.698, H2O.21

4 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain A: E.584, F.677, N.679, E.681 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.584, A:F.677, A:E.681, H2O.8, H2O.9 CA.5: 6 residues within 4Å: Chain A: K.114, D.541, F.542, D.543, D.687, L.688 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.541, A:D.543, A:D.687, A:L.688, H2O.8 CA.12: 4 residues within 4Å: Chain B: E.584, F.677, N.679, E.681 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.584, B:F.677, B:E.681, H2O.21, H2O.22 CA.13: 6 residues within 4Å: Chain B: K.114, D.541, F.542, D.543, D.687, L.688 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.541, B:D.543, B:D.687, B:L.688, H2O.21

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 3 residues within 4Å: Chain A: L.204, T.210, N.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.210, A:T.210, A:N.216 NAG.7: 3 residues within 4Å: Chain A: N.429, T.440, V.442 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.429 Water bridges: A:N.429 NAG.8: 2 residues within 4Å: Chain A: N.631 Chain B: N.572 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.572 NAG.14: 3 residues within 4Å: Chain B: L.204, T.210, N.216 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.210, B:N.216 NAG.15: 3 residues within 4Å: Chain B: N.429, T.440, V.442 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.429 Water bridges: B:N.429 NAG.16: 2 residues within 4Å: Chain A: N.572 Chain B: N.631 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.572

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McGrath, A.P. et al., Structure and Activity of Aspergillus nidulans Copper Amine Oxidase. Biochemistry (2011)

Release Date

2011-07-13

Peptides

Putative uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative uncharacterized protein