SMTL ID : 3pk7.3 (3 other biounits)

Crystal structure of D-mannonate dehydratase from Chromohalobacter salexigens with MG and Glycerol bound in the active site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.213, E.239, E.265, R.286 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.213, A:E.239, A:E.265, H2O.1, H2O.1, H2O.2 MG.3: 5 residues within 4Å: Chain B: D.213, H.215, E.239, E.265, R.286 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.213, B:E.239, B:E.265, H2O.15, H2O.15, H2O.16

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: N.39, Y.161, P.173, H.215, H.315, P.317, D.319, W.405 Chain B: Y.77, W.78 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.39, A:Y.161, A:Y.161, A:D.319 GOL.4: 10 residues within 4Å: Chain A: Y.77, W.78 Chain B: N.39, Y.161, P.173, H.215, H.315, P.317, D.319, W.405 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Water bridges: A:Y.77, B:T.318 Hydrogen bonds: B:N.39, B:Y.161, B:Y.161, B:D.319

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fedorov, A.A. et al., Crystal structure of D-mannonate dehydratase from Chromohalobacter salexigens with MG and Glycerol bound in the active site. To be Published

Release Date

2011-11-16

Peptides

Mandelate racemase/muconate lactonizing enzyme: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
H

Mandelate racemase/muconate lactonizing enzyme

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