SMTL ID : 3pka.1 (1 other biounit)

M. tuberculosis MetAP with bengamide analog Y02, in Mn form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 7 residues within 4Å: Chain A: D.142, H.205, T.236, E.238, E.269 Ligands: MN.2, Y02.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.142, A:H.205, A:E.238, A:E.269 MN.2: 6 residues within 4Å: Chain A: D.131, D.142, E.238, E.269 Ligands: MN.1, Y02.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.131, A:D.131, A:D.142, A:E.269

1 x Y02: (2R,3R,4S,5R,6E)-3,4,5-trihydroxy-2-methoxy-8,8-dimethyl-N-[2-(2,4,6-trimethylphenoxy)ethyl]non-6-enamide(Non-covalent)

Y02.3: 20 residues within 4Å: Chain A: E.35, G.36, T.94, Y.97, C.105, H.114, D.131, T.133, D.142, T.203, H.205, F.211, H.212, V.216, E.238, M.240, W.255, E.269 Ligands: MN.1, MN.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.94, A:Y.97, A:Y.97, A:F.211, A:H.212, A:V.216, A:W.255 Hydrogen bonds: A:T.133, A:T.203, A:T.203 Water bridges: A:Q.267

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 1 residues within 4Å: Chain A: R.200 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.200

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: R.169, R.193 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, J.P. et al., Inhibition of Mycobacterium tuberculosis Methionine Aminopeptidases by Bengamide Derivatives. Chemmedchem (2011)

Release Date

2011-04-20

Peptides

Methionine aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase

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