- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.25 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x Y16: (E,2R,3R,4S,5R)-N-(2-azanyl-2-oxidanylidene-ethyl)-2-methoxy-8,8-dimethyl-3,4,5-tris(oxidanyl)non-6-enamide(Non-covalent)
- 6 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 7 residues within 4Å:- Chain A: D.142, H.205, T.236, E.238, E.269
- Ligands: Y16.1, MN.3
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.142, A:H.205, A:E.238, A:E.269
MN.3: 5 residues within 4Å:- Chain A: D.131, D.142, E.269
- Ligands: Y16.1, MN.2
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.131, A:D.131, A:D.142, A:E.269
MN.7: 7 residues within 4Å:- Chain B: D.142, H.205, T.236, E.238, E.269
- Ligands: Y16.6, MN.8
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.142, B:H.205, B:E.238, B:E.269
MN.8: 5 residues within 4Å:- Chain B: D.131, D.142, E.269
- Ligands: Y16.6, MN.7
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.131, B:D.131, B:D.142, B:E.269
MN.12: 7 residues within 4Å:- Chain C: D.142, H.205, T.236, E.238, E.269
- Ligands: Y16.11, MN.13
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.142, C:H.205, C:E.238, C:E.269
MN.13: 5 residues within 4Å:- Chain C: D.131, D.142, E.269
- Ligands: Y16.11, MN.12
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.131, C:D.131, C:D.142, C:E.269
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 2 residues within 4Å:- Chain A: R.200
- Chain C: N.20
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:N.20
- Water bridges: C:N.20, C:W.21, A:Y.220
- Salt bridges: A:R.200
SO4.9: 2 residues within 4Å:- Chain A: N.20
- Chain B: R.200
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Water bridges: B:Y.220, A:N.20, A:W.21
- Salt bridges: B:R.200
- Hydrogen bonds: A:N.20
SO4.14: 2 residues within 4Å:- Chain B: N.20
- Chain C: R.200
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:N.20
- Water bridges: B:N.20, B:W.21, C:Y.220
- Salt bridges: C:R.200
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lu, J.P. et al., Inhibition of Mycobacterium tuberculosis Methionine Aminopeptidases by Bengamide Derivatives. Chemmedchem (2011)
- Release Date
- 2011-04-20
- Peptides
- Methionine aminopeptidase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.25 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x Y16: (E,2R,3R,4S,5R)-N-(2-azanyl-2-oxidanylidene-ethyl)-2-methoxy-8,8-dimethyl-3,4,5-tris(oxidanyl)non-6-enamide(Non-covalent)
- 6 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lu, J.P. et al., Inhibition of Mycobacterium tuberculosis Methionine Aminopeptidases by Bengamide Derivatives. Chemmedchem (2011)
- Release Date
- 2011-04-20
- Peptides
- Methionine aminopeptidase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A