SMTL ID : 3plr.1

Crystal structure of Klebsiella pneumoniae UDP-glucose 6-dehydrogenase complexed with NADH and UDP-glucose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 20 residues within 4Å: Chain A: G.43, T.44, G.45, Y.46, V.47, L.64, D.65, I.66, V.67, K.70, A.116, T.117, P.118, T.119, S.153, T.154, E.177, L.179, E.181, K.233 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.47, A:E.177, A:L.179 Hydrogen bonds: A:T.44, A:T.44, A:T.44, A:Y.46, A:V.47, A:I.66, A:T.117, A:T.119, A:T.154, A:E.181, A:E.181 Water bridges: A:G.45, A:G.45, A:T.119, A:T.119 NAI.3: 20 residues within 4Å: Chain B: G.43, T.44, G.45, Y.46, V.47, L.64, D.65, I.66, V.67, K.70, A.116, T.117, P.118, T.119, S.153, T.154, E.177, L.179, E.181, K.233 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:V.47, B:E.177, B:L.179 Hydrogen bonds: B:T.44, B:T.44, B:Y.46, B:V.47, B:I.66, B:T.117, B:T.119, B:T.154, B:E.181, B:E.181, B:E.181 Water bridges: B:G.45, B:G.45, B:T.119, B:T.119

2 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.2: 11 residues within 4Å: Chain A: V.244, Y.278, N.279, N.280, S.282, Y.285, G.286, G.287, L.290, R.403 Chain B: R.273 11 PLIP interactions: 10 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.278 Hydrogen bonds: A:N.279, A:N.280, A:N.280, A:S.282, A:G.286, A:R.403, B:R.273 Water bridges: A:Y.278, A:G.284, A:R.403 U5P.4: 11 residues within 4Å: Chain A: R.273 Chain B: V.244, Y.278, N.279, N.280, S.282, Y.285, G.286, G.287, L.290, R.403 12 PLIP interactions: 11 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.278 Hydrogen bonds: B:Y.278, B:N.279, B:N.280, B:N.280, B:S.282, B:G.286, B:R.403, A:R.273 Water bridges: B:Y.278, B:G.284, B:R.403

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y.Y. et al., Conformational change upon product binding to Klebsiella pneumoniae UDP-glucose dehydrogenase: a possible inhibition mechanism for the key enzyme in polymyxin resistance. J.Struct.Biol. (2011)

Release Date

2011-09-28

Peptides

UDP-glucose 6-dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

UDP-glucose 6-dehydrogenase

Related Entries With Identical Sequence