SMTL ID : 3pnx.2 (1 other biounit)

Crystal structure of a putative sulfurtransferase dsrE (Swol_2425) from Syntrophomonas wolfei str. Goettingen at 1.92 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-trimer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 7 residues within 4Å: Chain A: L.158, F.159 Chain B: L.158, F.159 Chain C: L.158, F.159 Ligands: NA.4 Ligand excluded by PLIP

5 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: E.63, E.126, I.127, G.129 Chain B: E.99 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.63, A:I.127 NA.3: 3 residues within 4Å: Chain A: Q.157 Chain B: Q.157 Chain C: Q.157 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.157 NA.4: 5 residues within 4Å: Chain A: F.159 Chain B: F.159 Chain C: F.159 Ligands: CL.1, GOL.5 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 2 interactions with chain C Hydrogen bonds: A:F.159, B:F.159, C:F.159, C:F.159 NA.7: 5 residues within 4Å: Chain B: E.63, E.126, I.127, G.129 Chain C: E.99 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.63, B:E.63 NA.8: 5 residues within 4Å: Chain A: E.99 Chain C: E.63, E.126, I.127, G.129 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.63, C:E.126

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 11 residues within 4Å: Chain A: K.18, F.159, I.160 Chain B: K.18, F.159, I.160 Chain C: S.13, K.18, F.159, I.160 Ligands: NA.4 7 PLIP interactions: 2 interactions with chain B, 3 interactions with chain C, 2 interactions with chain A Hydrogen bonds: B:F.159, B:I.160, C:S.13, C:K.18, C:I.160, A:K.18, A:K.18 GOL.6: 7 residues within 4Å: Chain A: G.14, W.43, L.46, P.71, P.78 Chain B: K.81, M.82 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative sulfurtransferase dsrE (Swol_2425) from Syntrophomonas wolfei str. Goettingen at 1.92 A resolution. To be published

Release Date

2010-12-15

Peptides

Putative sulfurtransferase dsrE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Putative sulfurtransferase dsrE

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