- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x HDD: CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE(Covalent)(Non-covalent)
- 4 x HDE: CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE 17R, 18S(Covalent)
HDE.2: 26 residues within 4Å:- Chain A: R.125, V.127, H.128, R.165, G.184, F.185, A.186, V.199, G.200, N.201, F.206, A.211, F.214, G.273, C.274, F.391, L.407, R.411, S.414, Y.415, T.418, Q.419, R.422
- Chain D: D.118
- Ligands: HDD.1, H2S.3
25 PLIP interactions:25 interactions with chain A,- Hydrophobic interactions: A:R.125, A:V.127, A:H.128, A:V.199, A:F.206, A:A.211, A:F.214, A:F.214, A:F.214, A:F.214, A:F.214, A:F.391, A:L.407, A:L.407, A:R.411, A:Y.415, A:Y.415
- Hydrogen bonds: A:Q.419
- Salt bridges: A:R.125, A:R.165, A:R.422
- pi-Stacking: A:H.128, A:F.214
- pi-Cation interactions: A:R.411
- Metal complexes: A:Y.415
HDE.5: 25 residues within 4Å:- Chain B: R.125, V.127, H.128, R.165, G.184, F.185, A.186, V.199, G.200, N.201, A.211, F.214, C.274, H.275, F.391, L.407, R.411, S.414, Y.415, T.418, Q.419
- Chain C: F.117, D.118
- Ligands: HDD.4, H2S.6
22 PLIP interactions:20 interactions with chain B, 1 interactions with chain C, 1 Ligand-Water interactions- Hydrophobic interactions: B:R.125, B:H.128, B:V.199, B:A.211, B:F.214, B:F.214, B:F.214, B:F.214, B:L.407, B:R.411, B:Y.415, B:Y.415, C:F.117
- Hydrogen bonds: B:Q.419
- Water bridges: B:A.186
- Salt bridges: B:R.125, B:R.165
- pi-Stacking: B:H.128, B:F.214
- pi-Cation interactions: B:R.411
- Metal complexes: B:Y.415, H2O.65
HDE.8: 25 residues within 4Å:- Chain B: F.117
- Chain C: R.125, V.127, H.128, R.165, G.184, F.185, A.186, V.199, G.200, N.201, A.211, F.214, G.273, C.274, H.275, F.391, L.407, R.411, S.414, Y.415, T.418, Q.419
- Ligands: HDD.7, H2S.9
26 PLIP interactions:24 interactions with chain C, 1 interactions with chain B, 1 Ligand-Water interactions- Hydrophobic interactions: C:R.125, C:H.128, C:V.199, C:A.211, C:F.214, C:F.214, C:F.214, C:F.214, C:F.214, C:F.391, C:L.407, C:L.407, C:R.411, C:Y.415, C:Y.415, B:F.117
- Hydrogen bonds: C:R.165, C:Q.419
- Water bridges: C:F.391
- Salt bridges: C:R.125, C:R.165
- pi-Stacking: C:H.128, C:F.214
- pi-Cation interactions: C:R.411
- Metal complexes: C:Y.415, H2O.94
HDE.11: 24 residues within 4Å:- Chain D: R.125, V.127, H.128, R.165, G.184, F.185, A.186, V.199, G.200, N.201, F.206, A.211, F.214, C.274, H.275, F.391, L.407, R.411, S.414, Y.415, T.418, Q.419
- Ligands: HDD.10, H2S.12
27 PLIP interactions:26 interactions with chain D, 1 Ligand-Water interactions- Hydrophobic interactions: D:R.125, D:H.128, D:A.186, D:V.199, D:N.201, D:F.206, D:A.211, D:F.214, D:F.214, D:F.214, D:F.214, D:F.214, D:F.391, D:L.407, D:L.407, D:R.411, D:Y.415, D:Y.415
- Hydrogen bonds: D:Q.419
- Water bridges: D:R.165
- Salt bridges: D:R.125, D:R.165
- pi-Stacking: D:H.128, D:F.214
- pi-Cation interactions: D:R.411
- Metal complexes: D:Y.415, H2O.129
- 4 x H2S: HYDROSULFURIC ACID(Non-covalent)
H2S.3: 5 residues within 4Å:- Chain A: I.205, F.206, C.274
- Ligands: HDD.1, HDE.2
No protein-ligand interaction detected (PLIP)H2S.6: 5 residues within 4Å:- Chain B: I.205, F.206, C.274
- Ligands: HDD.4, HDE.5
No protein-ligand interaction detected (PLIP)H2S.9: 5 residues within 4Å:- Chain C: I.205, F.206, C.274
- Ligands: HDD.7, HDE.8
No protein-ligand interaction detected (PLIP)H2S.12: 5 residues within 4Å:- Chain D: I.205, F.206, C.274
- Ligands: HDD.10, HDE.11
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jha, V. et al., Modulation of heme orientation and binding by a single residue in catalase HPII of Escherichia coli. Biochemistry (2011)
- Release Date
- 2010-12-22
- Peptides
- Catalase HPII: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x HDD: CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE(Covalent)(Non-covalent)
- 4 x HDE: CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE 17R, 18S(Covalent)
- 4 x H2S: HYDROSULFURIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jha, V. et al., Modulation of heme orientation and binding by a single residue in catalase HPII of Escherichia coli. Biochemistry (2011)
- Release Date
- 2010-12-22
- Peptides
- Catalase HPII: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D