SMTL ID : 3pqd.1 (1 other biounit)

Crystal structure of L-lactate dehydrogenase from Bacillus subtilis complexed with FBP and NAD+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

homo-tetramer

Ligands

2 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)

FBP.1: 12 residues within 4Å: Chain A: R.156, Q.168, N.169, H.171 Chain C: R.156, P.167, Q.168, N.169, V.170, H.171, A.172, H.173 14 PLIP interactions: 5 interactions with chain A, 9 interactions with chain C Hydrogen bonds: A:N.169, C:N.169, C:V.170, C:A.172, C:A.172, C:A.172 Water bridges: A:G.192, A:I.254, C:H.173 Salt bridges: A:R.156, A:H.171, C:R.156, C:H.171, C:H.173 FBP.3: 8 residues within 4Å: Chain B: R.156, Q.168, N.169, H.171 Chain D: R.156, Q.168, N.169, H.171 11 PLIP interactions: 6 interactions with chain D, 5 interactions with chain B Hydrogen bonds: D:N.169, B:N.169 Water bridges: D:R.156, D:R.156, B:A.172 Salt bridges: D:R.156, D:H.171, D:H.171, B:R.156, B:H.171, B:H.171

1 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 17 residues within 4Å: Chain D: G.12, G.14, F.15, V.16, D.37, V.38, C.80, A.81, I.101, I.105, A.121, T.122, N.123, R.154, H.178, T.232, V.236 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:V.16, D:T.232, D:V.236 Hydrogen bonds: D:F.15, D:V.16, D:V.38, D:N.123, D:N.123, D:R.154, D:R.154, D:H.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

zhang, Y. et al., Crystal structure of L-lactate dehydrogenase from Bacillus subtilis complexed with FBP and NAD+. To be Published

Release Date

2012-01-18

Peptides

L-lactate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

L-lactate dehydrogenase

Related Entries With Identical Sequence