SMTL ID : 3pqs.1

The crystal structures of porcine pathogen ApH87_TbpB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

15 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: E.163, R.183, T.204, K.212, R.214 Ligands: GOL.5 Ligand excluded by PLIP GOL.2: 7 residues within 4Å: Chain A: D.290, L.372, R.376, N.485, G.486, G.487, Y.489 Ligand excluded by PLIP GOL.3: 4 residues within 4Å: Chain A: Q.201, L.203, E.211, L.213 Ligand excluded by PLIP GOL.4: 6 residues within 4Å: Chain A: T.93, K.94, S.95, G.96, S.97, N.98 Ligand excluded by PLIP GOL.5: 7 residues within 4Å: Chain A: N.161, P.162, E.163, D.237, P.238, I.239 Ligands: GOL.1 Ligand excluded by PLIP GOL.6: 5 residues within 4Å: Chain A: E.69, H.128, E.303, N.305 Ligands: GOL.15 Ligand excluded by PLIP GOL.7: 5 residues within 4Å: Chain A: E.218, N.220, R.227, G.228, K.229 Ligand excluded by PLIP GOL.8: 1 residues within 4Å: Chain A: R.29 Ligand excluded by PLIP GOL.9: 3 residues within 4Å: Chain A: Q.27, K.30, H.266 Ligand excluded by PLIP GOL.10: 6 residues within 4Å: Chain A: K.293, I.315, D.316, K.338, M.340 Ligands: GOL.12 Ligand excluded by PLIP GOL.11: 2 residues within 4Å: Chain A: N.190, N.199 Ligand excluded by PLIP GOL.12: 3 residues within 4Å: Chain A: K.293, S.302 Ligands: GOL.10 Ligand excluded by PLIP GOL.13: 3 residues within 4Å: Chain A: Y.388, T.492, R.517 Ligand excluded by PLIP GOL.14: 6 residues within 4Å: Chain A: S.97, N.98, T.99, M.100, N.101, K.277 Ligand excluded by PLIP GOL.15: 8 residues within 4Å: Chain A: H.128, P.129, K.131, P.254, E.303, L.304, N.305 Ligands: GOL.6 Ligand excluded by PLIP

1 x CAC: CACODYLATE ION(Non-covalent)

CAC.16: 5 residues within 4Å: Chain A: N.309, N.311, E.350, Y.351, E.375 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.311, A:E.375, A:E.375

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Calmettes, C. et al., Structural Variations within the Transferrin Binding Site on Transferrin-binding Protein B, TbpB. J.Biol.Chem. (2011)

Release Date

2011-02-02

Peptides

transferrin-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

transferrin-binding protein