SMTL ID : 3pto.1

Crystal Structure of an empty Vesicular Stomatitis Virus Nucleocapsid Protein Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

homo-10-mer

Ligands

30 x IUM: URANYL (VI) ION(Non-functional Binders)(Non-covalent)

IUM.1: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.2: 3 residues within 4Å: Chain A: D.342 Chain E: E.252, E.322 Ligand excluded by PLIP IUM.3: 3 residues within 4Å: Chain A: D.357, D.358 Chain E: D.383 Ligand excluded by PLIP IUM.4: 2 residues within 4Å: Chain A: D.383 Chain B: D.357 Ligand excluded by PLIP IUM.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.6: 3 residues within 4Å: Chain A: E.252, E.322 Chain B: D.342 Ligand excluded by PLIP IUM.7: 1 residues within 4Å: Chain B: D.383 Ligand excluded by PLIP IUM.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.9: 3 residues within 4Å: Chain B: E.252, E.322 Chain C: D.342 Ligand excluded by PLIP IUM.10: 1 residues within 4Å: Chain C: D.383 Ligand excluded by PLIP IUM.11: 1 residues within 4Å: Chain D: D.122 Ligand excluded by PLIP IUM.12: 3 residues within 4Å: Chain C: E.252, E.322 Chain D: D.342 Ligand excluded by PLIP IUM.13: 3 residues within 4Å: Chain D: E.252, E.322 Chain J: D.342 Ligand excluded by PLIP IUM.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.15: 3 residues within 4Å: Chain E: D.357, D.358 Chain I: D.383 Ligand excluded by PLIP IUM.16: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.17: 3 residues within 4Å: Chain F: D.342 Chain J: E.252, E.322 Ligand excluded by PLIP IUM.18: 3 residues within 4Å: Chain F: D.357, D.358 Chain J: D.383 Ligand excluded by PLIP IUM.19: 2 residues within 4Å: Chain F: D.383 Chain G: D.357 Ligand excluded by PLIP IUM.20: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.21: 3 residues within 4Å: Chain F: E.252, E.322 Chain G: D.342 Ligand excluded by PLIP IUM.22: 1 residues within 4Å: Chain G: D.383 Ligand excluded by PLIP IUM.23: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.24: 3 residues within 4Å: Chain G: E.252, E.322 Chain H: D.342 Ligand excluded by PLIP IUM.25: 1 residues within 4Å: Chain H: D.383 Ligand excluded by PLIP IUM.26: 1 residues within 4Å: Chain I: D.122 Ligand excluded by PLIP IUM.27: 3 residues within 4Å: Chain H: E.252, E.322 Chain I: D.342 Ligand excluded by PLIP IUM.28: 3 residues within 4Å: Chain E: D.342 Chain I: E.252, E.322 Ligand excluded by PLIP IUM.29: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IUM.30: 3 residues within 4Å: Chain D: D.383 Chain J: D.357, D.358 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Green, T.J. et al., Access to RNA Encapsidated in the Nucleocapsid of Vesicular Stomatitis Virus. J.Virol. (2011)

Release Date

2011-01-12

Peptides

Nucleoprotein: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
A

G
B

H
C

I
D

J
E

Nucleoprotein

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