SMTL ID : 3pxl.1

Type-2 Cu-depleted fungus laccase from Trametes hirsuta

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA-MAN-MAN-MAN-MAN.1: 12 residues within 4Å: Chain A: A.14, F.20, S.21, R.22, Q.23, N.54, T.56, M.57, H.153, T.154, A.155, L.158 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.22, A:A.155 Hydrogen bonds: A:A.155

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA.2: 6 residues within 4Å: Chain A: G.215, H.216, N.217, Q.252, V.297, K.298 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.297

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 7 residues within 4Å: Chain A: S.319, A.325, I.326, N.327, S.383, P.385, N.436 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.327 Water bridges: A:I.326, A:N.327

4 x CU: COPPER (II) ION(Non-covalent)

CU.4: 6 residues within 4Å: Chain A: P.79, H.111, H.398, H.400, F.450, H.452 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.111, A:H.400, A:H.452, H2O.25 CU.5: 6 residues within 4Å: Chain A: H.64, H.66, W.107, H.109, A.241, H.454 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.66, A:H.109, A:H.454, H2O.25 CU.6: 6 residues within 4Å: Chain A: H.395, P.396, C.453, I.455, H.458, F.463 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.395, A:C.453, A:H.458 CU.7: 5 residues within 4Å: Chain A: H.64, H.66, G.67, H.398, H.400 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.64, A:H.398, A:H.398, H2O.9

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 5 residues within 4Å: Chain A: N.333, G.334, S.335, N.336, F.338 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.335 Water bridges: A:N.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Polyakov, K.M. et al., Crystal structure of T2-depleted fungal laccase from Trametes hirsuta at low and high dose of ionization radiation. To be Published

Release Date

2011-02-16

Peptides

Laccase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Laccase