SMTL ID : 3pzp.1 (1 other biounit)

Human DNA polymerase kappa extending opposite a cis-syn thymine dimer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.34 Å

Oligo State

monomer

Ligands

1 x DTP: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE(Non-covalent)

DTP.1: 17 residues within 4Å: Chain A: A.15, D.96, M.97, D.98, A.99, F.100, Y.101, S.126, T.127, Y.130, R.133, D.187, E.188, K.317 Chain B: A.13 Chain C: T.5 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.101 Hydrogen bonds: A:A.99, A:F.100, A:Y.101, A:T.127, A:Y.130, A:Y.130 Water bridges: A:D.96, A:D.96 Salt bridges: A:R.133, A:R.133, A:K.317

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.96, M.97, D.187 Ligands: DTP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:M.97, A:D.187 MG.3: 4 residues within 4Å: Chain A: R.341, V.343, I.346 Chain B: C.12 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:R.341, A:V.343, A:I.346

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vasquez-Del Carpio, R. et al., Role of human DNA polymerase kappa in extension opposite from a cis-syn thymine dimer. J.Mol.Biol. (2011)

Release Date

2011-12-28

Peptides

DNA polymerase kappa: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase kappa

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