SMTL ID : 3pzr.2 (1 other biounit)

Crystals structure of aspartate beta-Semialdehyde dehydrogenase from Vibrio Cholerae with NADP and product of S-carbamoyl-L-cysteine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x CYS: CYSTEINE(Non-covalent)

CYS.1: 11 residues within 4Å: Chain A: N.133, C.134, Q.161, G.165, A.166, I.229, E.240, R.267, H.274, Q.350 Ligands: NAP.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.133, A:E.240 Water bridges: A:D.230, A:D.230 Salt bridges: A:R.267, A:H.274 CYS.4: 11 residues within 4Å: Chain B: N.133, C.134, Q.161, G.165, A.166, I.229, E.240, R.267, H.274, Q.350 Ligands: NAP.5 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.133, B:E.240 Water bridges: B:E.240 Salt bridges: B:R.267, B:H.274

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 17 residues within 4Å: Chain A: G.7, R.9, G.10, M.11, V.12, S.35, T.36, S.37, C.71, Q.72, G.73, G.74, A.97, G.165, A.166, Q.350 Ligands: CYS.1 27 PLIP interactions: 25 interactions with chain A, 1 Ligand-Ligand interactions, 1 interactions with chain B Hydrophobic interactions: A:V.12 Hydrogen bonds: A:G.7, A:R.9, A:G.10, A:M.11, A:V.12, A:T.36, A:T.36, A:T.36, A:S.37, A:Q.72, A:Q.72, A:G.74, C.1 Water bridges: A:G.7, A:W.8, A:R.9, A:G.13, A:F.34, A:S.37, A:S.37, A:Q.72, A:S.98, B:P.192 Salt bridges: A:R.9 pi-Cation interactions: A:R.9, A:R.9 NAP.5: 17 residues within 4Å: Chain B: G.7, R.9, G.10, M.11, V.12, S.35, T.36, S.37, C.71, Q.72, G.73, G.74, A.97, G.165, A.166, Q.350 Ligands: CYS.4 26 PLIP interactions: 24 interactions with chain B, 1 Ligand-Ligand interactions, 1 interactions with chain A Hydrophobic interactions: B:V.12 Hydrogen bonds: B:G.7, B:R.9, B:G.10, B:M.11, B:V.12, B:T.36, B:T.36, B:S.37, B:Q.72, B:Q.72, B:G.74, C.4 Water bridges: B:G.7, B:W.8, B:R.9, B:G.13, B:F.34, B:S.37, B:S.37, B:Q.72, B:S.98, A:P.192 Salt bridges: B:R.9 pi-Cation interactions: B:R.9, B:R.9

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: G.210, F.212 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.214 NA.6: 2 residues within 4Å: Chain B: G.210, F.212 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.212 Water bridges: B:D.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pavlovsky, A.G. et al., Structural Characterization of Inhibitors with Selectivity against Members of a Homologous Enzyme Family. Chem.Biol.Drug Des. (2012)

Release Date

2012-01-04

Peptides

Aspartate-semialdehyde dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Aspartate-semialdehyde dehydrogenase

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