SMTL ID : 3pzw.1

Soybean lipoxygenase-1 - re-refinement

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 5 residues within 4Å: Chain A: H.499, H.504, H.690, N.694, I.839 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.499, A:H.504, A:H.690, H2O.1

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: F.144, A.145, N.146, H.147, V.520, L.521, K.526 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.147, A:K.526 EDO.3: 4 residues within 4Å: Chain A: D.291, G.295, G.296, K.298 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.291, A:G.295, A:K.298 Water bridges: A:K.298 EDO.4: 4 residues within 4Å: Chain A: I.412, P.415, A.569, V.570 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.412 Water bridges: A:A.569, A:V.570 EDO.5: 8 residues within 4Å: Chain A: F.346, K.483, A.484, I.487, M.705, N.706, P.708, Y.734 1 PLIP interactions: 1 interactions with chain A Water bridges: A:W.340

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 8 residues within 4Å: Chain A: D.440, G.441, T.442, D.607, S.804, L.805, G.807, N.808 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.442 Hydrogen bonds: A:G.807, A:N.808

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chruszcz, M. et al., Determination of protein structures - a series of fortunate events. Biophys.J. (2008)

Release Date

2011-01-19

Peptides

Seed lipoxygenase-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Seed lipoxygenase-1

Related Entries With Identical Sequence