SMTL ID : 3q0a.1 (1 other biounit)

X-ray crystal structure of the transcription initiation complex of the N4 mini-vRNAP with P2 promoter: Mismatch complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: Q.481, I.485, K.486, V.487, H.488 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.485, A:V.487, A:H.488 Salt bridges: A:K.486, A:H.488

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 10 residues within 4Å: Chain A: R.436, K.449, R.452, I.937, I.961, F.962, D.963 Chain B: T.15, C.16, A.17 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.436, A:R.436, A:D.963 Water bridges: A:R.436, A:K.682, A:K.682 Salt bridges: A:K.449, A:K.449, A:K.449, A:R.452, A:K.682

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gleghorn, M.L. et al., X-ray crystal structures elucidate the nucleotidyl transfer reaction of transcript initiation using two nucleotides. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-02-23

Peptides

Virion RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Virion RNA polymerase

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