- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)
- 20 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 5 residues within 4Å:- Chain A: N.151, Q.153, E.154, D.210, Y.211
Ligand excluded by PLIPSO4.3: 3 residues within 4Å:- Chain A: P.41, D.42, K.47
Ligand excluded by PLIPSO4.4: 2 residues within 4Å:- Chain A: N.186, A.187
Ligand excluded by PLIPSO4.5: 2 residues within 4Å:- Chain A: D.83, K.84
Ligand excluded by PLIPSO4.6: 3 residues within 4Å:- Chain A: T.54, G.55, D.56
Ligand excluded by PLIPSO4.7: 3 residues within 4Å:- Chain A: G.14, H.40, D.42
Ligand excluded by PLIPSO4.8: 2 residues within 4Å:- Chain A: Y.18, N.19
Ligand excluded by PLIPSO4.9: 5 residues within 4Å:- Chain A: K.27, D.31, N.283, Y.284, E.289
Ligand excluded by PLIPSO4.10: 3 residues within 4Å:- Chain A: Y.118, V.245, T.246
Ligand excluded by PLIPSO4.11: 10 residues within 4Å:- Chain A: A.52, T.54, G.57, P.58, D.59, N.268, A.270, S.271, P.272
- Chain B: K.383
Ligand excluded by PLIPSO4.19: 5 residues within 4Å:- Chain B: N.151, Q.153, E.154, D.210, Y.211
Ligand excluded by PLIPSO4.20: 3 residues within 4Å:- Chain B: P.41, D.42, K.47
Ligand excluded by PLIPSO4.21: 2 residues within 4Å:- Chain B: N.186, A.187
Ligand excluded by PLIPSO4.22: 2 residues within 4Å:- Chain B: D.83, K.84
Ligand excluded by PLIPSO4.23: 3 residues within 4Å:- Chain B: T.54, G.55, D.56
Ligand excluded by PLIPSO4.24: 3 residues within 4Å:- Chain B: G.14, H.40, D.42
Ligand excluded by PLIPSO4.25: 2 residues within 4Å:- Chain B: Y.18, N.19
Ligand excluded by PLIPSO4.26: 5 residues within 4Å:- Chain B: K.27, D.31, N.283, Y.284, E.289
Ligand excluded by PLIPSO4.27: 3 residues within 4Å:- Chain B: Y.118, V.245, T.246
Ligand excluded by PLIPSO4.28: 10 residues within 4Å:- Chain A: K.383
- Chain B: A.52, T.54, G.57, P.58, D.59, N.268, A.270, S.271, P.272
Ligand excluded by PLIP- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.12: 7 residues within 4Å:- Chain A: Y.168, A.169, F.170, Y.172, Y.177, F.259, P.332
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:A.169, A:F.170
- Water bridges: A:W.159, A:F.170, A:Y.172
GOL.13: 5 residues within 4Å:- Chain A: K.171, Y.172, E.173, K.176, D.178
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.172, A:E.173, A:D.178
- Water bridges: A:Y.177, A:D.178
GOL.14: 3 residues within 4Å:- Chain A: N.13, D.42, K.43
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:D.42, A:K.43
- Water bridges: A:N.13, A:N.13, A:G.14, A:G.14, A:L.44
GOL.15: 1 residues within 4Å:- Chain A: R.355
No protein-ligand interaction detected (PLIP)GOL.16: 4 residues within 4Å:- Chain A: R.99, Y.100, N.101, G.102
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.101, A:N.101, A:G.102
- Water bridges: A:R.99, A:N.333
GOL.17: 7 residues within 4Å:- Chain A: A.72, G.75, L.76, L.77, E.79, I.105
- Chain B: D.373
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:A.72, A:G.75, A:G.75, A:L.77, A:E.79
- Water bridges: B:D.373, B:D.373
GOL.29: 7 residues within 4Å:- Chain B: Y.168, A.169, F.170, Y.172, Y.177, F.259, P.332
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:A.169, B:F.170
- Water bridges: B:W.159, B:F.170, B:Y.172
GOL.30: 5 residues within 4Å:- Chain B: K.171, Y.172, E.173, K.176, D.178
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.172, B:E.173, B:D.178
- Water bridges: B:Y.177
GOL.31: 3 residues within 4Å:- Chain B: N.13, D.42, K.43
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:K.43
- Water bridges: B:N.13, B:N.13, B:G.14, B:G.14, B:L.44
GOL.32: 1 residues within 4Å:- Chain B: R.355
No protein-ligand interaction detected (PLIP)GOL.33: 4 residues within 4Å:- Chain B: R.99, Y.100, N.101, G.102
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.101, B:N.101, B:G.102
- Water bridges: B:R.99, B:N.333
GOL.34: 7 residues within 4Å:- Chain A: D.373
- Chain B: A.72, G.75, L.76, L.77, E.79, I.105
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:A.72, B:G.75, B:G.75, B:L.77, B:E.79
- Water bridges: A:D.373
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhao, M. et al., Structures of segments of alpha-synuclein fused to maltose-binding protein suggest intermediate states during amyloid formation. Protein Sci. (2011)
- Release Date
- 2011-06-01
- Peptides
- Maltose-binding periplasmic protein/alpha-synuclein chimeric protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)
- 20 x SO4: SULFATE ION(Non-functional Binders)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhao, M. et al., Structures of segments of alpha-synuclein fused to maltose-binding protein suggest intermediate states during amyloid formation. Protein Sci. (2011)
- Release Date
- 2011-06-01
- Peptides
- Maltose-binding periplasmic protein/alpha-synuclein chimeric protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A