SMTL ID : 3q4p.1

Crystal structure of the complex of type I ribosome inactivating protein with 7n-methyl -8-hydroguanosine-5-p-diphosphate at 1.8 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x M7G: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE(Non-covalent)

M7G.1: 14 residues within 4Å: Chain A: Y.70, I.71, M.72, F.83, E.85, G.109, N.110, Y.111, E.112, I.155, E.160, R.163, E.189, N.190 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:I.71, A:N.110, A:Y.111, A:Y.111, A:E.112, A:E.112, A:R.163, A:R.163, A:N.190 Water bridges: A:E.160, A:E.160, A:W.192 Salt bridges: A:E.85 pi-Stacking: A:Y.70

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 8 residues within 4Å: Chain A: N.33, V.232, V.233, T.234, S.235, N.236, I.237, Q.238 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.33, A:V.232, A:Q.238

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: L.6, G.8, A.9, Y.55, P.130, A.175, Y.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.8, A:A.9, A:A.9

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 4 residues within 4Å: Chain A: T.226, N.227, T.229, S.230 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.226, A:N.227 Water bridges: A:S.230, A:N.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kushwaha, G.S. et al., Crystal structure of the complex of type I ribosome inactivating protein with 7n-methyl-8-hydroguanosine-5-p-diphosphate at 1.8 A resolution. To be Published

Release Date

2011-01-12

Peptides

Ribosome inactivating protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosome inactivating protein

Related Entries With Identical Sequence