- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.44 Å
- Oligo State
- homo-hexamer
- Ligands
- 18 x CA: CALCIUM ION(Non-covalent)
- 6 x POP: PYROPHOSPHATE 2-(Non-covalent)
POP.3: 14 residues within 4Å:- Chain A: K.30, R.44, Y.56, D.66, D.71, D.98, D.103, Y.140, K.141
- Ligands: CA.1, CA.2, BR.4, NA.5, CA.6
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:D.71, A:D.71
- Water bridges: A:K.30, A:K.105, A:K.105, A:K.141
- Salt bridges: A:K.30, A:K.30, A:R.44, A:K.105, A:K.141
POP.9: 14 residues within 4Å:- Chain B: K.30, R.44, Y.56, D.66, D.71, D.98, D.103, Y.140, K.141
- Ligands: CA.7, CA.8, BR.10, NA.11, CA.12
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:D.71, B:D.71
- Water bridges: B:K.30, B:K.105, B:K.105, B:K.141
- Salt bridges: B:K.30, B:K.30, B:R.44, B:K.105, B:K.141
POP.15: 14 residues within 4Å:- Chain C: K.30, R.44, Y.56, D.66, D.71, D.98, D.103, Y.140, K.141
- Ligands: CA.13, CA.14, BR.16, NA.17, CA.18
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:D.71, C:D.71
- Water bridges: C:K.30, C:K.105, C:K.105, C:K.141
- Salt bridges: C:K.30, C:K.30, C:R.44, C:K.105, C:K.141
POP.21: 14 residues within 4Å:- Chain D: K.30, R.44, Y.56, D.66, D.71, D.98, D.103, Y.140, K.141
- Ligands: CA.19, CA.20, BR.22, NA.23, CA.24
16 PLIP interactions:16 interactions with chain D- Hydrogen bonds: D:Y.56, D:D.66, D:D.71, D:D.71, D:Y.140
- Water bridges: D:K.30, D:Y.52, D:D.68, D:K.105, D:K.105, D:K.141
- Salt bridges: D:K.30, D:K.30, D:R.44, D:K.105, D:K.141
POP.27: 14 residues within 4Å:- Chain E: K.30, R.44, Y.56, D.66, D.71, D.98, D.103, Y.140, K.141
- Ligands: CA.25, CA.26, BR.28, NA.29, CA.30
16 PLIP interactions:16 interactions with chain E- Hydrogen bonds: E:Y.56, E:D.66, E:D.71, E:D.71, E:Y.140
- Water bridges: E:K.30, E:Y.52, E:D.68, E:K.105, E:K.105, E:K.141
- Salt bridges: E:K.30, E:K.30, E:R.44, E:K.105, E:K.141
POP.33: 14 residues within 4Å:- Chain F: K.30, R.44, Y.56, D.66, D.71, D.98, D.103, Y.140, K.141
- Ligands: CA.31, CA.32, BR.34, NA.35, CA.36
16 PLIP interactions:16 interactions with chain F- Hydrogen bonds: F:Y.56, F:D.66, F:D.71, F:D.71, F:Y.140
- Water bridges: F:K.30, F:Y.52, F:D.68, F:K.105, F:K.105, F:K.141
- Salt bridges: F:K.30, F:K.30, F:R.44, F:K.105, F:K.141
- 6 x BR: BROMIDE ION(Non-covalent)
BR.4: 7 residues within 4Å:- Chain A: E.22, Y.56, G.57, I.58, D.71
- Ligands: POP.3, NA.5
Ligand excluded by PLIPBR.10: 7 residues within 4Å:- Chain B: E.22, Y.56, G.57, I.58, D.71
- Ligands: POP.9, NA.11
Ligand excluded by PLIPBR.16: 7 residues within 4Å:- Chain C: E.22, Y.56, G.57, I.58, D.71
- Ligands: POP.15, NA.17
Ligand excluded by PLIPBR.22: 7 residues within 4Å:- Chain D: E.22, Y.56, G.57, I.58, D.71
- Ligands: POP.21, NA.23
Ligand excluded by PLIPBR.28: 7 residues within 4Å:- Chain E: E.22, Y.56, G.57, I.58, D.71
- Ligands: POP.27, NA.29
Ligand excluded by PLIPBR.34: 7 residues within 4Å:- Chain F: E.22, Y.56, G.57, I.58, D.71
- Ligands: POP.33, NA.35
Ligand excluded by PLIP- 6 x NA: SODIUM ION(Non-functional Binders)
NA.5: 4 residues within 4Å:- Chain A: D.71
- Ligands: CA.2, POP.3, BR.4
3 PLIP interactions:3 interactions with chain A- Water bridges: A:E.22, A:E.22, A:E.22
NA.11: 4 residues within 4Å:- Chain B: D.71
- Ligands: CA.8, POP.9, BR.10
1 PLIP interactions:1 interactions with chain B- Water bridges: B:E.22
NA.17: 4 residues within 4Å:- Chain C: D.71
- Ligands: CA.14, POP.15, BR.16
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.71
NA.23: 4 residues within 4Å:- Chain D: D.71
- Ligands: CA.20, POP.21, BR.22
1 PLIP interactions:1 interactions with chain D- Water bridges: D:E.22
NA.29: 4 residues within 4Å:- Chain E: D.71
- Ligands: CA.26, POP.27, BR.28
2 PLIP interactions:2 interactions with chain E- Water bridges: E:E.22, E:E.22
NA.35: 4 residues within 4Å:- Chain F: D.71
- Ligands: CA.32, POP.33, BR.34
2 PLIP interactions:2 interactions with chain F- Water bridges: F:E.22, F:E.22
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hughes, R.C. et al., Inorganic pyrophosphatase crystals from Thermococcus thioreducens for X-ray and neutron diffraction. Acta Crystallogr.,Sect.F (2012)
- Release Date
- 2012-01-04
- Peptides
- Tt-IPPase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.44 Å
- Oligo State
- homo-hexamer
- Ligands
- 18 x CA: CALCIUM ION(Non-covalent)
- 6 x POP: PYROPHOSPHATE 2-(Non-covalent)
- 6 x BR: BROMIDE ION(Non-covalent)
- 6 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hughes, R.C. et al., Inorganic pyrophosphatase crystals from Thermococcus thioreducens for X-ray and neutron diffraction. Acta Crystallogr.,Sect.F (2012)
- Release Date
- 2012-01-04
- Peptides
- Tt-IPPase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A