SMTL ID : 3q88.1

Glucose-6-phosphate isomerase from Francisella tularensis complexed with ribose 1,5-bisphosphate.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x RI2: 1,5-di-O-phosphono-alpha-D-ribofuranose(Non-covalent)

RI2.1: 16 residues within 4Å: Chain A: I.148, G.149, G.150, S.151, S.201, K.202, S.203, T.206, G.263, Q.345, E.349, Q.501, V.504, K.508 Chain B: Q.379, H.380 27 PLIP interactions: 22 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:G.150, A:S.151, A:S.151, A:K.202, A:S.203, A:T.206, A:Q.345, A:E.349, B:H.380 Water bridges: A:G.150, A:S.151, A:S.151, A:A.200, A:S.201, A:S.203, A:G.263, A:S.266, A:E.349, A:K.508, A:K.508, A:K.508, B:H.380, B:H.380 Salt bridges: A:K.508, A:K.508, B:H.380, B:H.380 RI2.7: 16 residues within 4Å: Chain A: Q.379, H.380 Chain B: I.148, G.149, G.150, S.151, S.201, K.202, S.203, T.206, G.263, Q.345, E.349, Q.501, V.504, K.508 26 PLIP interactions: 23 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:G.150, B:S.151, B:S.151, B:K.202, B:S.203, B:T.206, B:Q.345, B:E.349, A:H.380 Water bridges: B:G.150, B:S.151, B:S.151, B:A.200, B:S.201, B:S.203, B:G.263, B:S.266, B:K.508, B:K.508, B:K.508, B:K.508, B:K.508 Salt bridges: B:K.508, B:K.508, A:H.380, A:H.380

4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 4 residues within 4Å: Chain A: N.77, P.101, L.102, I.103 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.77, A:N.77, A:I.103 MES.3: 6 residues within 4Å: Chain A: Q.163, P.164, H.166, H.404 Chain B: Q.185, H.188 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.185, A:Q.163, A:Q.163 Water bridges: B:H.188 Salt bridges: B:H.188, A:H.404 MES.8: 4 residues within 4Å: Chain B: N.77, P.101, L.102, I.103 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.77, B:N.77, B:I.103 MES.9: 6 residues within 4Å: Chain A: Q.185, H.188 Chain B: Q.163, P.164, H.166, H.404 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Q.185, B:Q.163, B:Q.163 Salt bridges: A:H.188, B:H.404 Water bridges: B:H.404

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 7 residues within 4Å: Chain A: N.41, Y.43, A.401, L.467, L.468, D.469 Chain B: K.539 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.43, A:L.467 PO4.10: 7 residues within 4Å: Chain A: K.539 Chain B: N.41, Y.43, A.401, L.467, L.468, D.469 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.43, B:L.467

2 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.5: 7 residues within 4Å: Chain A: H.39, Q.40, N.41, I.42, Y.474, S.475, A.478 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Q.40, A:I.42, A:Y.474, A:Y.474, A:A.478 Hydrogen bonds: A:Q.40, A:N.41, A:N.41 Water bridges: A:D.469, A:D.469 IPA.11: 7 residues within 4Å: Chain B: H.39, Q.40, N.41, I.42, Y.474, S.475, A.478 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Q.40, B:I.42, B:Y.474, B:Y.474, B:A.478 Hydrogen bonds: B:Q.40, B:N.41, B:N.41 Water bridges: B:D.469, B:D.469

2 x CA: CALCIUM ION(Non-covalent)

CA.6: 1 residues within 4Å: Chain A: E.64 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.64, H2O.2, H2O.2, H2O.2, H2O.3 CA.12: 1 residues within 4Å: Chain B: E.64 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.64, H2O.21, H2O.21, H2O.21, H2O.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., Glucose-6-phosphate isomerase from Francisella tularensis. To be Published

Release Date

2011-01-19

Peptides

Glucose-6-phosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glucose-6-phosphate isomerase

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