- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-dimer
- Ligands
- 20 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 2 x B3N: 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide(Non-covalent)
B3N.10: 15 residues within 4Å:- Chain A: Y.19, F.27, E.117, H.158, H.159, Y.168, D.195, H.197, F.225, D.284, P.290, I.291, G.321
- Ligands: DMS.1, ZN.13
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:Y.19, A:F.27, A:E.117, A:Y.168, A:F.225, A:I.291
- Hydrogen bonds: A:H.159
- Water bridges: A:E.17, A:Y.168
B3N.26: 16 residues within 4Å:- Chain B: Y.19, F.27, H.158, H.159, G.167, Y.168, D.195, H.197, F.225, D.284, P.290, I.291, G.321, Y.323
- Ligands: DMS.9, ZN.29
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:Y.19, B:F.27, B:Y.168, B:F.225, B:F.225, B:I.291
- Hydrogen bonds: B:H.159, B:G.322
- Water bridges: B:E.17, B:Y.168, B:F.225
- 4 x K: POTASSIUM ION(Non-covalent)
K.11: 6 residues within 4Å:- Chain A: D.193, D.195, H.197, S.216, L.217, H.218
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.193, A:D.195, A:H.197, A:S.216, A:L.217
K.14: 6 residues within 4Å:- Chain A: F.286, E.287, D.289, S.292, F.293, F.294
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.289, A:S.292, H2O.5
K.27: 6 residues within 4Å:- Chain B: D.193, D.195, H.197, S.216, L.217, H.218
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.193, B:D.193, B:D.195, B:H.197, B:S.216
K.30: 6 residues within 4Å:- Chain B: F.286, E.287, D.289, S.292, F.293, F.294
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:F.286, B:D.289, B:S.292, B:F.294, H2O.13
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.12: 4 residues within 4Å:- Chain A: F.206, R.209, V.212, T.243
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.209, A:R.209
- Water bridges: A:T.243
NA.28: 4 residues within 4Å:- Chain B: F.206, R.209, V.212, T.243
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.209, B:T.243, B:T.243
- Water bridges: B:T.243
- 2 x ZN: ZINC ION(Non-covalent)
ZN.13: 5 residues within 4Å:- Chain A: D.195, H.197, D.284, G.321
- Ligands: B3N.10
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.195, A:D.195, A:H.197, A:D.284
ZN.29: 4 residues within 4Å:- Chain B: D.195, H.197, D.284
- Ligands: B3N.26
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.195, B:D.195, B:H.197, B:D.284
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lombardi, P.M. et al., Structure of prokaryotic polyamine deacetylase reveals evolutionary functional relationships with eukaryotic histone deacetylases . Biochemistry (2011)
- Release Date
- 2011-03-02
- Peptides
- Acetylpolyamine amidohydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- homo-dimer
- Ligands
- 20 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 2 x B3N: 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lombardi, P.M. et al., Structure of prokaryotic polyamine deacetylase reveals evolutionary functional relationships with eukaryotic histone deacetylases . Biochemistry (2011)
- Release Date
- 2011-03-02
- Peptides
- Acetylpolyamine amidohydrolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
F