SMTL ID : 3qao.1

The crystal structure of the N-terminal domain of a MerR-like transcriptional regulator from Listeria monocytogenes EGD-e

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

homo-dimer

Ligands

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: L.74, F.75, D.76, V.79, A.80 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.76, A:D.76 Water bridges: A:D.72, A:D.72 GOL.2: 5 residues within 4Å: Chain A: F.121, F.124 Chain B: L.12, T.13, G.14 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.121, A:F.124 Water bridges: A:G.123, A:F.126 GOL.3: 4 residues within 4Å: Chain A: T.97, A.100, T.101, T.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.101, A:T.101 GOL.4: 3 residues within 4Å: Chain A: D.48 Chain B: N.108, K.120 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.108, B:E.109, B:K.120, B:K.120 GOL.5: 5 residues within 4Å: Chain A: I.26, P.62, L.63, K.64, Q.67 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:L.63, A:K.64, A:Q.67 Water bridges: B:G.140 GOL.6: 3 residues within 4Å: Chain A: I.6, Y.39, R.40 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.40, A:R.40, A:R.40 GOL.7: 5 residues within 4Å: Chain B: L.74, F.75, D.76, V.79, A.80 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.76, B:D.76 GOL.8: 5 residues within 4Å: Chain A: L.12, T.13, G.14 Chain B: F.121, F.124 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:F.121, B:F.124 Water bridges: B:G.123, B:F.126 GOL.9: 4 residues within 4Å: Chain B: T.97, A.100, T.101, T.122 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.101 Water bridges: B:T.122, B:T.122 GOL.10: 3 residues within 4Å: Chain A: N.108, K.120 Chain B: D.48 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.108, A:E.109, A:K.120, A:K.120 GOL.11: 5 residues within 4Å: Chain B: I.26, P.62, L.63, K.64, Q.67 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Water bridges: A:G.140 Hydrogen bonds: B:L.63, B:K.64, B:Q.67 GOL.12: 3 residues within 4Å: Chain B: I.6, Y.39, R.40 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.40, B:R.40, B:R.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of the N-terminal domain of a MerR-like transcriptional regulator from Listeria monocytogenes EGD-e. To be Published

Release Date

2011-01-26

Peptides

MerR-like transcriptional regulator: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

MerR-like transcriptional regulator