SMTL ID : 3qga.1

3.0 A Model of Iron Containing Urease UreA2B2 from Helicobacter mustelae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-12-12-mer

Ligands

24 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain B: K.218, H.220, H.247, H.273, G.278 Ligands: FE.2 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.247, B:H.273, H2O.1 FE.2: 5 residues within 4Å: Chain B: H.135, H.137, K.218, D.361 Ligands: FE.1 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.135, B:H.137, B:D.361, H2O.1 FE.3: 6 residues within 4Å: Chain D: K.218, H.220, H.247, H.273, G.278 Ligands: FE.4 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.247, D:H.273, H2O.5 FE.4: 5 residues within 4Å: Chain D: H.135, H.137, K.218, D.361 Ligands: FE.3 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.135, D:H.137, D:D.361, H2O.5 FE.5: 6 residues within 4Å: Chain F: K.218, H.220, H.247, H.273, G.278 Ligands: FE.6 3 PLIP interactions: 2 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.247, F:H.273, H2O.9 FE.6: 5 residues within 4Å: Chain F: H.135, H.137, K.218, D.361 Ligands: FE.5 4 PLIP interactions: 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.135, F:H.137, F:D.361, H2O.9 FE.7: 6 residues within 4Å: Chain H: K.218, H.220, H.247, H.273, G.278 Ligands: FE.8 3 PLIP interactions: 2 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:H.247, H:H.273, H2O.13 FE.8: 5 residues within 4Å: Chain H: H.135, H.137, K.218, D.361 Ligands: FE.7 4 PLIP interactions: 3 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:H.135, H:H.137, H:D.361, H2O.13 FE.9: 6 residues within 4Å: Chain J: K.218, H.220, H.247, H.273, G.278 Ligands: FE.10 3 PLIP interactions: 2 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:H.247, J:H.273, H2O.16 FE.10: 5 residues within 4Å: Chain J: H.135, H.137, K.218, D.361 Ligands: FE.9 4 PLIP interactions: 3 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:H.135, J:H.137, J:D.361, H2O.16 FE.11: 6 residues within 4Å: Chain L: K.218, H.220, H.247, H.273, G.278 Ligands: FE.12 3 PLIP interactions: 2 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:H.247, L:H.273, H2O.20 FE.12: 5 residues within 4Å: Chain L: H.135, H.137, K.218, D.361 Ligands: FE.11 4 PLIP interactions: 3 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:H.135, L:H.137, L:D.361, H2O.20 FE.13: 6 residues within 4Å: Chain N: K.218, H.220, H.247, H.273, G.278 Ligands: FE.14 3 PLIP interactions: 2 interactions with chain N, 1 Ligand-Water interactions Metal complexes: N:H.247, N:H.273, H2O.24 FE.14: 5 residues within 4Å: Chain N: H.135, H.137, K.218, D.361 Ligands: FE.13 4 PLIP interactions: 3 interactions with chain N, 1 Ligand-Water interactions Metal complexes: N:H.135, N:H.137, N:D.361, H2O.24 FE.15: 6 residues within 4Å: Chain P: K.218, H.220, H.247, H.273, G.278 Ligands: FE.16 3 PLIP interactions: 2 interactions with chain P, 1 Ligand-Water interactions Metal complexes: P:H.247, P:H.273, H2O.28 FE.16: 5 residues within 4Å: Chain P: H.135, H.137, K.218, D.361 Ligands: FE.15 4 PLIP interactions: 3 interactions with chain P, 1 Ligand-Water interactions Metal complexes: P:H.135, P:H.137, P:D.361, H2O.28 FE.17: 6 residues within 4Å: Chain R: K.218, H.220, H.247, H.273, G.278 Ligands: FE.18 3 PLIP interactions: 2 interactions with chain R, 1 Ligand-Water interactions Metal complexes: R:H.247, R:H.273, H2O.32 FE.18: 5 residues within 4Å: Chain R: H.135, H.137, K.218, D.361 Ligands: FE.17 4 PLIP interactions: 3 interactions with chain R, 1 Ligand-Water interactions Metal complexes: R:H.135, R:H.137, R:D.361, H2O.32 FE.19: 6 residues within 4Å: Chain T: K.218, H.220, H.247, H.273, G.278 Ligands: FE.20 3 PLIP interactions: 2 interactions with chain T, 1 Ligand-Water interactions Metal complexes: T:H.247, T:H.273, H2O.36 FE.20: 5 residues within 4Å: Chain T: H.135, H.137, K.218, D.361 Ligands: FE.19 4 PLIP interactions: 3 interactions with chain T, 1 Ligand-Water interactions Metal complexes: T:H.135, T:H.137, T:D.361, H2O.36 FE.21: 6 residues within 4Å: Chain V: K.218, H.220, H.247, H.273, G.278 Ligands: FE.22 3 PLIP interactions: 2 interactions with chain V, 1 Ligand-Water interactions Metal complexes: V:H.247, V:H.273, H2O.40 FE.22: 5 residues within 4Å: Chain V: H.135, H.137, K.218, D.361 Ligands: FE.21 4 PLIP interactions: 3 interactions with chain V, 1 Ligand-Water interactions Metal complexes: V:H.135, V:H.137, V:D.361, H2O.40 FE.23: 6 residues within 4Å: Chain X: K.218, H.220, H.247, H.273, G.278 Ligands: FE.24 3 PLIP interactions: 2 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:H.247, X:H.273, H2O.44 FE.24: 5 residues within 4Å: Chain X: H.135, H.137, K.218, D.361 Ligands: FE.23 4 PLIP interactions: 3 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:H.135, X:H.137, X:D.361, H2O.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carter, E.L. et al., Iron-containing urease in a pathogenic bacterium. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-08-10

Peptides

Fusion of urease beta and gamma subunits: ACEGIKMOQSUW
Urease subunit beta 2: BDFHJLNPRTVX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

E
G

G
J

I
M

K
P

M
A

O
D

Q
G

S
J

U
M

W
P

B
C

D
F

F
I

H
L

J
O

L
R

N
C

P
F

R
I

T
L

V
O

X
R

Fusion of urease beta and gamma subunits

Urease subunit beta 2

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