SMTL ID : 3qgu.1

L,L-Diaminopimelate aminotransferase from Chlamydomonas reinhardtii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: K.282, G.288, R.290 Chain B: R.101, G.103, Y.104, N.325 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:Y.104, B:N.325, A:G.288 Salt bridges: B:R.101, A:K.282, A:R.290 Water bridges: A:R.290 SO4.2: 7 residues within 4Å: Chain A: G.140, S.141, K.142, S.279, S.281, Y.283 Chain B: N.321 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.141, A:K.142, A:S.279, A:S.281, B:N.321 Water bridges: A:Y.283, A:Y.283 Salt bridges: A:K.142 SO4.6: 8 residues within 4Å: Chain A: R.101, G.103, Y.104, N.325 Chain B: K.282, T.287, G.288, R.290 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:G.288, A:Y.104, A:N.325 Water bridges: B:G.288, B:R.290, A:N.325 Salt bridges: B:K.282, B:R.290, A:R.101 SO4.7: 7 residues within 4Å: Chain A: N.321 Chain B: G.140, S.141, K.142, S.279, S.281, Y.283 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.141, B:S.141, B:K.142, B:S.281, B:S.281, A:N.321 Water bridges: B:K.142, B:K.142, B:Y.283, B:Y.283 Salt bridges: B:K.142

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: F.124, A.249, A.250, A.252, L.253, C.278, S.279, W.293 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.249, A:S.279, A:S.279 Water bridges: A:Y.125, A:Y.125, A:L.253 GOL.8: 8 residues within 4Å: Chain B: A.249, A.250, A.252, L.253, C.278, S.279, F.280, W.293 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.249, B:S.279 Water bridges: B:L.253, B:K.262

3 x AZI: AZIDE ION(Non-covalent)

AZI.4: 5 residues within 4Å: Chain A: T.34, D.36 Chain B: R.239, K.240, G.242 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.34, A:T.34, A:D.36 AZI.5: 3 residues within 4Å: Chain A: E.81, M.346, F.349 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.81 Water bridges: A:P.82 AZI.9: 2 residues within 4Å: Chain B: P.268, G.269 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dobson, R.C.J. et al., L,L-Diaminopimelate Aminotransferase from Chlamydomonas reinhardtii: A Target for Algaecide Development. Plos One (2011)

Release Date

2011-06-01

Peptides

LL-diaminopimelate aminotransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

LL-diaminopimelate aminotransferase