SMTL ID : 3qia.1

Crystal structure of P-loop G237A mutant of subunit A of the A1AO ATP synthase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 5 residues within 4Å: Chain A: H.245, Q.246, K.249, K.279, A.507 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.245, A:Q.246 MPD.6: 3 residues within 4Å: Chain A: A.457, D.460, K.461 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.457 MPD.11: 4 residues within 4Å: Chain A: E.555, E.562, K.567, L.571 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.555, A:L.571 Water bridges: A:R.558 MPD.12: 4 residues within 4Å: Chain A: P.551, E.581, L.582, K.585 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.551, A:L.582

7 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 2 residues within 4Å: Chain A: L.34, A.48 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.196 ACY.3: 3 residues within 4Å: Chain A: A.330, Y.368, G.390 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.368 ACY.4: 4 residues within 4Å: Chain A: Q.244, H.245, A.248, F.275 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.248 Salt bridges: A:H.245 ACY.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ACY.8: 1 residues within 4Å: Chain A: R.114 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.114 Hydrogen bonds: A:R.114 ACY.9: 3 residues within 4Å: Chain A: K.123, D.134, S.379 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.123, A:S.379 ACY.10: 2 residues within 4Å: Chain A: I.212, D.252 No protein-ligand interaction detected (PLIP)

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.7: 5 residues within 4Å: Chain A: I.451, D.452, V.521, R.525, R.569 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.452, A:D.452, A:R.525 Water bridges: A:T.522

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Priya, R. et al., Conserved glycine residues in the P-loop of ATP synthases form a doorframe for nucleotide entrance. J.Mol.Biol. (2011)

Release Date

2011-10-05

Peptides

V-type ATP synthase alpha chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

V-type ATP synthase alpha chain