SMTL ID : 3qj1.1

Crystal structure of camel peptidoglycan recognition protein, PGRP-S with a trapped diethylene glycol in the ligand diffusion channel at 3.2 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-tetramer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 5 residues within 4Å: Chain A: N.126, A.129 Chain B: D.2, C.6 Chain D: R.31 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:R.31, A:N.126

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 11 residues within 4Å: Chain C: H.37, A.39, N.110, T.152, L.153, S.154 Chain D: H.37, A.39, T.152, L.153 Ligands: GOL.3 9 PLIP interactions: 4 interactions with chain D, 5 interactions with chain C Hydrogen bonds: D:T.152, D:L.153, D:S.154, C:N.110, C:T.152, C:L.153, C:S.154 Salt bridges: D:H.37, C:H.37

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain C: P.151, T.152 Chain D: H.37, T.38, Y.71, H.93, H.146 Ligands: TLA.2 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:T.38, D:H.93, C:P.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, P. et al., Crystal structure of camel peptidoglycan recognition protein, PGRP-S with a trapped diethylene glycol in the ligand diffusion channel at 3.2 A resolution. To be Published

Release Date

2011-02-16

Peptides

Peptidoglycan recognition protein 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Peptidoglycan recognition protein 1

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