SMTL ID : 3qkw.1

Structure of Streptococcus parasangunini Gtf3 glycosyltransferase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-tetramer

Ligands

4 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 14 residues within 4Å: Chain A: T.18, H.158, P.176, R.181, Y.197, Y.213, R.214, D.216, L.219, Y.244, S.246, Y.247, K.248, S.251 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:P.176 Hydrogen bonds: A:R.214, A:R.214, A:D.216, A:Y.244, A:Y.247, A:K.248, A:S.251 Salt bridges: A:R.181, A:R.181, A:K.248, A:K.248 pi-Stacking: A:Y.213 UDP.2: 13 residues within 4Å: Chain B: T.18, P.176, R.181, Y.197, Y.213, R.214, D.216, L.219, M.233, S.246, Y.247, K.248, S.251 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:P.176, B:Y.197 Hydrogen bonds: B:R.214, B:R.214, B:D.216, B:Y.247, B:K.248, B:S.251, B:S.251 Salt bridges: B:R.181, B:R.181, B:K.248, B:K.248 pi-Stacking: B:Y.213 UDP.3: 14 residues within 4Å: Chain C: T.18, H.158, P.176, R.181, F.182, Y.197, Y.213, R.214, D.216, L.219, S.246, Y.247, K.248, S.251 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:P.176, C:Y.197 Hydrogen bonds: C:T.18, C:R.214, C:R.214, C:R.214, C:D.216, C:D.216, C:Y.247, C:K.248, C:S.251, C:S.251 Salt bridges: C:R.181, C:R.181, C:K.248, C:K.248 pi-Stacking: C:Y.213 UDP.4: 12 residues within 4Å: Chain D: T.18, H.158, P.176, R.181, Y.197, Y.213, R.214, D.216, S.246, Y.247, K.248, S.251 17 PLIP interactions: 17 interactions with chain D Hydrophobic interactions: D:P.176, D:Y.197 Hydrogen bonds: D:T.18, D:R.214, D:R.214, D:D.216, D:D.216, D:Y.247, D:K.248, D:S.251 Water bridges: D:N.178, D:R.181 Salt bridges: D:R.181, D:R.181, D:K.248, D:K.248 pi-Stacking: D:Y.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, F. et al., Structural and Functional Analysis of a New Subfamily of Glycosyltransferases Required for Glycosylation of Serine-rich Streptococcal Adhesins. J.Biol.Chem. (2011)

Release Date

2011-06-08

Peptides

Nucleotide sugar synthetase-like protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Nucleotide sugar synthetase-like protein