SMTL ID : 3qn3.1 (2 other biounits)

Phosphopyruvate hydratase from Campylobacter jejuni.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

homo-octamer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.242, E.283, D.310, K.386 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.242, A:E.283, A:D.310, H2O.3, H2O.6, H2O.6 MG.4: 5 residues within 4Å: Chain B: Q.165, D.242, E.283, D.310, K.386 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.242, B:E.283, B:D.310, H2O.8, H2O.9, H2O.13 MG.7: 4 residues within 4Å: Chain C: D.242, E.283, D.310, K.386 6 PLIP interactions: 3 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.242, C:E.283, C:D.310, H2O.16, H2O.20, H2O.21 MG.12: 3 residues within 4Å: Chain D: D.242, E.283, D.310 6 PLIP interactions: 3 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.242, D:E.283, D:D.310, H2O.24, H2O.25, H2O.25 MG.15: 4 residues within 4Å: Chain E: D.242, E.283, D.310, K.386 6 PLIP interactions: 3 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:D.242, E:E.283, E:D.310, H2O.32, H2O.35, H2O.36 MG.18: 5 residues within 4Å: Chain F: Q.165, D.242, E.283, D.310, K.386 6 PLIP interactions: 3 interactions with chain F, 3 Ligand-Water interactions Metal complexes: F:D.242, F:E.283, F:D.310, H2O.38, H2O.39, H2O.43 MG.21: 4 residues within 4Å: Chain G: D.242, E.283, D.310, K.386 6 PLIP interactions: 3 interactions with chain G, 3 Ligand-Water interactions Metal complexes: G:D.242, G:E.283, G:D.310, H2O.46, H2O.50, H2O.50 MG.26: 3 residues within 4Å: Chain H: D.242, E.283, D.310 6 PLIP interactions: 3 interactions with chain H, 3 Ligand-Water interactions Metal complexes: H:D.242, H:E.283, H:D.310, H2O.54, H2O.54, H2O.55

8 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 5 residues within 4Å: Chain A: K.25, A.37, R.122, E.369, D.370 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.369 Hydrogen bonds: A:A.37 Water bridges: A:A.37 MPD.5: 7 residues within 4Å: Chain B: K.25, A.37, A.38, R.122, E.369, D.370 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.37 Water bridges: B:A.37 MPD.8: 7 residues within 4Å: Chain C: K.25, A.37, A.38, I.39, R.122, E.369, D.370 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:I.39 Water bridges: C:A.37 MPD.13: 7 residues within 4Å: Chain D: K.25, A.37, I.39, R.122, E.369, D.370 Ligands: GOL.10 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:I.39, D:E.369 Hydrogen bonds: D:K.25, D:K.25, D:D.370 MPD.16: 5 residues within 4Å: Chain E: K.25, A.37, R.122, E.369, D.370 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:E.369 Hydrogen bonds: E:A.37, E:D.370 Water bridges: E:A.37 MPD.19: 7 residues within 4Å: Chain F: K.25, A.37, A.38, R.122, E.369, D.370 Ligands: GOL.17 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:A.37 Water bridges: F:A.37 MPD.22: 7 residues within 4Å: Chain G: K.25, A.37, A.38, I.39, R.122, E.369, D.370 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:I.39 Water bridges: G:A.37 MPD.27: 7 residues within 4Å: Chain H: K.25, A.37, I.39, R.122, E.369, D.370 Ligands: GOL.24 4 PLIP interactions: 4 interactions with chain H Hydrophobic interactions: H:I.39, H:E.369 Hydrogen bonds: H:K.25, H:K.25

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: A.371, A.397, N.400, R.401, E.404 Chain B: K.25, I.39, E.369 Ligands: MPD.5 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:E.369, A:A.371 Hydrogen bonds: B:K.25 GOL.9: 2 residues within 4Å: Chain C: S.198, H.200 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.194, C:S.198, C:S.198 GOL.10: 8 residues within 4Å: Chain C: A.397, N.400, R.401, E.404 Chain D: K.25, I.39, E.369 Ligands: MPD.13 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.369, D:E.369 GOL.17: 9 residues within 4Å: Chain E: A.371, A.397, N.400, R.401, E.404 Chain F: K.25, I.39, E.369 Ligands: MPD.19 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:K.25, F:E.369 Water bridges: E:E.369, E:A.371 GOL.23: 2 residues within 4Å: Chain G: S.198, H.200 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:E.194, G:S.198, G:S.198 GOL.24: 8 residues within 4Å: Chain G: A.397, N.400, R.401, E.404 Chain H: K.25, I.39, E.369 Ligands: MPD.27 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:E.369

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 6 residues within 4Å: Chain B: G.302, N.303, K.304, I.305, Q.306, N.330 No protein-ligand interaction detected (PLIP) SO4.11: 6 residues within 4Å: Chain C: G.302, N.303, K.304, I.305, Q.306, N.330 No protein-ligand interaction detected (PLIP) SO4.14: 5 residues within 4Å: Chain D: G.302, K.304, I.305, Q.306, N.330 1 PLIP interactions: 1 interactions with chain D Salt bridges: D:K.358 SO4.20: 6 residues within 4Å: Chain F: G.302, N.303, K.304, I.305, Q.306, N.330 No protein-ligand interaction detected (PLIP) SO4.25: 6 residues within 4Å: Chain G: G.302, N.303, K.304, I.305, Q.306, N.330 No protein-ligand interaction detected (PLIP) SO4.28: 5 residues within 4Å: Chain H: G.302, K.304, I.305, Q.306, N.330 1 PLIP interactions: 1 interactions with chain H Salt bridges: H:K.358

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., Phosphopyruvate hydratase from Campylobacter jejuni. To be Published

Release Date

2011-02-23

Peptides

Enolase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

Enolase

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