SMTL ID : 3qq3.2 (1 other biounit)

Crystal structure of swine major histocompatibility complex class I SLA-1 0401 and identification of 2009 pandemic swine-origin influenza A H1N1 virus cytotoxic T lymphocyte epitope peptides

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

hetero-oligomer

Ligands

1 x ASN- SER- ASP- THR- VAL- GLY- TRP- SER- TRP: 9-mer peptide from Neuraminidase(Non-covalent)

ASN-SER-ASP-THR-VAL-GLY-TRP-SER-TRP.1: 29 residues within 4Å: Chain A: Y.7, Y.9, Y.59, E.63, N.66, E.69, T.70, T.73, Y.74, G.77, T.80, L.81, Y.84, L.95, Y.99, D.116, Y.123, T.143, K.146, W.147, A.150, E.152, R.155, R.156, Y.159, L.163, S.167, R.170, Y.171 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:E.69, A:T.73, A:L.81, A:L.95, A:Y.99, A:A.150, A:A.150, A:Y.159, A:L.163 Hydrogen bonds: A:Y.7, A:E.63, A:E.63, A:N.66, A:N.66, A:Y.84, A:Y.99, A:Y.99, A:D.116, A:E.152, A:R.156, A:R.156, A:S.167, A:S.167, A:R.170, A:Y.171 Water bridges: A:R.155 Salt bridges: A:K.146, A:R.156 pi-Stacking: A:Y.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, N. et al., Crystal structure of swine major histocompatibility complex class I SLA-1 0401 and identification of 2009 pandemic swine-origin influenza A H1N1 virus cytotoxic T lymphocyte epitope peptides. J.Virol. (2011)

Release Date

2011-12-28

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

MHC class I antigen

Beta-2-microglobulin

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