SMTL ID : 3qqb.1

Crystal structure of HA2 R106H mutant of H2 hemagglutinin, neutral pH form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.166, T.168, W.237 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 3 residues within 4Å: Chain C: N.166, T.168, W.237 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 3 residues within 4Å: Chain E: N.166, T.168, W.237 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: K.17, N.25 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.17 NAG.4: 4 residues within 4Å: Chain B: E.147, N.150, N.154, T.156 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.147, B:N.150, B:N.154 NAG.7: 2 residues within 4Å: Chain C: K.17, N.25 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.17 NAG.9: 4 residues within 4Å: Chain D: E.147, N.150, N.154, T.156 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.147, D:N.150, D:N.154 NAG.12: 2 residues within 4Å: Chain E: K.17, N.25 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:K.17 NAG.14: 4 residues within 4Å: Chain F: E.147, N.150, N.154, T.156 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:E.147, F:N.150, F:N.154

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: L.119, P.120, R.123, W.124 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.120 EDO.8: 4 residues within 4Å: Chain C: L.119, P.120, R.123, W.124 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:P.120 EDO.13: 4 residues within 4Å: Chain E: L.119, P.120, R.123, W.124 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:P.120

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 6 residues within 4Å: Chain A: C.6, I.324 Chain B: W.14, H.25, N.135, C.137 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.14 Water bridges: B:N.135 PEG.10: 6 residues within 4Å: Chain C: C.6, I.324 Chain D: W.14, H.25, N.135, C.137 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:W.14 Water bridges: D:N.135 PEG.15: 6 residues within 4Å: Chain E: C.6, I.324 Chain F: W.14, H.25, N.135, C.137 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:W.14 Water bridges: F:N.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, R. et al., Structural Characterization of an Early Fusion Intermediate of Influenza Virus Hemagglutinin. J.Virol. (2011)

Release Date

2011-03-09

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

Hemagglutinin

Hemagglutinin

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