SMTL ID : 3qt7.1

Crystal structure of Staphylococcus epidermidis mevalonate diphosphate decarboxylase complexed with inhibitor 6-FMVAPP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x FM0: (3R)-3-(fluoromethyl)-3-hydroxy-5-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}pentanoic acid(Non-covalent)

FM0.1: 15 residues within 4Å: Chain A: A.19, K.22, Y.23, W.24, K.26, I.32, S.144, G.145, S.146, R.149, S.197, R.198, M.201, D.288, A.289 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.24 Hydrogen bonds: A:Y.23, A:Y.23, A:Y.23, A:S.112, A:G.145, A:S.146, A:S.146, A:S.197 Water bridges: A:A.19, A:R.198, A:R.198 Salt bridges: A:K.26, A:R.149, A:R.198 FM0.2: 16 residues within 4Å: Chain B: A.19, K.22, Y.23, W.24, K.26, I.32, S.112, S.144, G.145, S.146, R.149, S.197, R.198, M.201, D.288, A.289 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:W.24 Hydrogen bonds: B:Y.23, B:Y.23, B:S.112, B:G.145, B:S.146, B:S.146, B:S.146, B:S.197 Water bridges: B:N.17, B:A.19 Salt bridges: B:K.26, B:R.149, B:R.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barta, M.L. et al., Crystal structures of Staphylococcus epidermidis mevalonate diphosphate decarboxylase bound to inhibitory analogs reveal new insight into substrate binding and catalysis. J.Biol.Chem. (2011)

Release Date

2011-05-11

Peptides

Mevalonate diphosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Mevalonate diphosphate decarboxylase

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