- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.2: 31 residues within 4Å:- Chain A: G.7, Y.9, G.10, I.11, V.12, H.56, E.57, I.58, R.59, T.99, A.100, C.103, I.107, L.110, V.147, A.148, S.149, T.150, A.181, Y.185, F.199, T.200, D.225, G.226, T.228, Y.260, D.261, K.274, D.332, A.336, K.367
24 PLIP interactions:24 interactions with chain A- Hydrophobic interactions: A:F.199, A:T.228
- Hydrogen bonds: A:Y.9, A:I.11, A:V.12, A:I.58, A:R.59, A:R.59, A:T.99, A:A.148, A:S.149, A:T.150, A:Y.185, A:T.228, A:D.261
- Water bridges: A:S.13, A:H.71, A:D.261, A:D.261, A:D.261, A:D.261, A:K.306, A:D.332
- pi-Cation interactions: A:K.274
NAD.8: 31 residues within 4Å:- Chain B: G.7, Y.9, G.10, I.11, V.12, H.56, E.57, I.58, R.59, T.99, A.100, C.103, I.107, L.110, V.147, A.148, S.149, T.150, A.181, Y.185, F.199, T.200, D.225, G.226, T.228, Y.260, D.261, K.274, D.332, A.336, K.367
24 PLIP interactions:24 interactions with chain B- Hydrophobic interactions: B:F.199, B:T.228
- Hydrogen bonds: B:Y.9, B:I.11, B:V.12, B:I.58, B:R.59, B:R.59, B:T.99, B:A.148, B:S.149, B:T.150, B:Y.185, B:T.228, B:D.261
- Water bridges: B:S.13, B:H.71, B:D.261, B:D.261, B:D.261, B:D.261, B:K.306, B:D.332
- pi-Cation interactions: B:K.274
NAD.14: 31 residues within 4Å:- Chain C: G.7, Y.9, G.10, I.11, V.12, H.56, E.57, I.58, R.59, T.99, A.100, C.103, I.107, L.110, V.147, A.148, S.149, T.150, A.181, Y.185, F.199, T.200, D.225, G.226, T.228, Y.260, D.261, K.274, D.332, A.336, K.367
23 PLIP interactions:23 interactions with chain C- Hydrophobic interactions: C:F.199, C:T.228
- Hydrogen bonds: C:Y.9, C:I.11, C:V.12, C:I.58, C:R.59, C:R.59, C:T.99, C:A.148, C:S.149, C:T.150, C:T.150, C:T.228, C:T.228, C:D.261
- Water bridges: C:S.13, C:E.151, C:D.261, C:D.261, C:D.261, C:K.306
- pi-Cation interactions: C:K.274
NAD.20: 31 residues within 4Å:- Chain D: G.7, Y.9, G.10, I.11, V.12, H.56, E.57, I.58, R.59, T.99, A.100, C.103, I.107, L.110, V.147, A.148, S.149, T.150, A.181, Y.185, F.199, T.200, D.225, G.226, T.228, Y.260, D.261, K.274, D.332, A.336, K.367
23 PLIP interactions:23 interactions with chain D- Hydrophobic interactions: D:F.199, D:T.228
- Hydrogen bonds: D:Y.9, D:I.11, D:V.12, D:I.58, D:R.59, D:R.59, D:T.99, D:A.148, D:S.149, D:T.150, D:T.150, D:T.228, D:T.228, D:D.261
- Water bridges: D:S.13, D:E.151, D:D.261, D:D.261, D:D.261, D:K.306
- pi-Cation interactions: D:K.274
- 4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
PG4.3: 3 residues within 4Å:- Chain A: E.131, E.132, K.135
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.135
PG4.9: 3 residues within 4Å:- Chain B: E.131, E.132, K.135
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.135
PG4.15: 3 residues within 4Å:- Chain C: E.131, E.132, K.135
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:K.135
PG4.21: 3 residues within 4Å:- Chain D: E.131, E.132, K.135
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:K.135
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 8 residues within 4Å:- Chain A: N.305, D.329, A.330, I.331
- Chain D: K.320, L.321, M.322, K.323
5 PLIP interactions:2 interactions with chain D, 1 interactions with chain B, 2 interactions with chain A- Water bridges: D:K.320, D:K.320, B:K.323, A:D.329
- Hydrogen bonds: A:I.331
GOL.11: 8 residues within 4Å:- Chain B: N.305, D.329, A.330, I.331
- Chain C: K.320, L.321, M.322, K.323
5 PLIP interactions:1 interactions with chain A, 2 interactions with chain B, 2 interactions with chain C- Water bridges: A:K.323, B:D.329, C:K.320, C:K.320
- Hydrogen bonds: B:I.331
GOL.17: 8 residues within 4Å:- Chain B: K.320, L.321, M.322, K.323
- Chain C: N.305, D.329, A.330, I.331
5 PLIP interactions:2 interactions with chain B, 1 interactions with chain D, 2 interactions with chain C- Water bridges: B:K.320, B:K.320, D:K.323, C:D.329
- Hydrogen bonds: C:I.331
GOL.23: 8 residues within 4Å:- Chain A: K.320, L.321, M.322, K.323
- Chain D: N.305, D.329, A.330, I.331
5 PLIP interactions:2 interactions with chain D, 2 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: D:I.331
- Water bridges: D:D.329, A:K.320, A:K.320, C:K.323
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.6: 5 residues within 4Å:- Chain A: D.329
- Chain B: Y.325
- Chain C: D.329
- Chain D: Y.325
- Ligands: NA.18
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:Y.325, C:D.329, C:D.329
NA.12: 5 residues within 4Å:- Chain A: Y.325
- Chain B: D.329
- Chain C: Y.325
- Chain D: D.329
- Ligands: NA.24
3 PLIP interactions:1 interactions with chain A, 1 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: A:Y.325, C:Y.325, D:D.329
NA.18: 5 residues within 4Å:- Chain A: D.329
- Chain B: Y.325
- Chain C: D.329
- Chain D: Y.325
- Ligands: NA.6
3 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: B:Y.325, A:D.329, C:D.329
NA.24: 5 residues within 4Å:- Chain A: Y.325
- Chain B: D.329
- Chain C: Y.325
- Chain D: D.329
- Ligands: NA.12
3 PLIP interactions:1 interactions with chain D, 1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: D:D.329, B:D.329, A:Y.325
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Neelon, K. et al., Crystal structure of a trapped catalytic intermediate suggests that forced atomic proximity drives the catalysis of mIPS. Biophys.J. (2011)
- Release Date
- 2012-01-11
- Peptides
- Myo-inositol-1-phosphate synthase (Ino1): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Neelon, K. et al., Crystal structure of a trapped catalytic intermediate suggests that forced atomic proximity drives the catalysis of mIPS. Biophys.J. (2011)
- Release Date
- 2012-01-11
- Peptides
- Myo-inositol-1-phosphate synthase (Ino1): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A